Adds CI to run unit tests against Pandas 3.0 #2
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run unit tests with Pandas 3.0 | |
| on: | |
| push: | |
| branches: [ develop ] | |
| pull_request: | |
| branches: [ develop, releases/** ] | |
| jobs: | |
| run_pandas_3_unit_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Set up Node | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: node | |
| - name: Install Pandas 3.0 (i.e., Nightly) | |
| run: | | |
| python3 -m pip install --upgrade pip pytest | |
| python3 -m pip install --upgrade --force-reinstall --pre --extra-index \ | |
| https://pypi.anaconda.org/scientific-python-nightly-wheels/simple pandas[pyarrow] | |
| - name: Install Python 3 dependencies | |
| run: | | |
| python3 -m pip install git+https://github.com/LLNL/hatchet.git@develop | |
| python3 -m pip install -r requirements.txt | |
| python3 -m pip install . | |
| python3 -m pip list | |
| # From here on, I'm making use of the trick from the following | |
| # GitHub repo to not fail the full CI/CD pipeline if this fails: | |
| # https://github.com/burningmantech/ranger-ims-server/pull/1347/files | |
| - name: Basic test with PyTest | |
| id: test | |
| run: | | |
| PYTHONPATH . $(which pytest) | |
| status=$? | |
| if [ $status -ne 0 ]; then | |
| echo "::warning::Optional CI test with Pandas 3 failed" | |
| echo "optional_fail=true" >> "${GITHUB_OUTPUT}" | |
| echo "optional_fail_status=${status}" >> "${GITHUB_OUTPUT}" | |
| fi | |
| exit 0 | |
| - name: Add comment to PR if test failed | |
| if: ${{ steps.test.outputs.optional_fail == 'true' }} | |
| uses: thollander/actions-comment-pull-request@v3 | |
| with: | |
| comment-tag: "pandas-3.0-test-notice" | |
| message: | | |
| ### Pandas 3.0 Unit Tests Failed! | |
| Due to breaking changes in Pandas 3.0 (namely, copy-on-write), we are performing optional | |
| tests of Thicket against the nightly release of Pandas 3.0. | |
| This is not a full testing failure, and it will not prevent your PR from being merged | |
| at this time. However, as we prepare for the release of Pandas 3.0, we encourage | |
| all developers to design their code to work with Pandas 3.0, if possible. | |
| Pytest status code: ${{ steps.test.outputs.optional_fail_status }} | |
| mode: 'upsert' | |
| - name: Add comment to PR if test passed | |
| if: ${{ steps.test.outputs.optional_fail == 'false' }} | |
| uses: thollander/actions-comment-pull-request@v3 | |
| with: | |
| comment-tag: "pandas-3.0-test-notice" | |
| message: | | |
| ### Pandas 3.0 Unit Tests Passed! | |
| Due to breaking changes in Pandas 3.0 (namely, copy-on-write), we are performing optional | |
| tests of Thicket against the nightly release of Pandas 3.0. | |
| This PR passed unit tests when run with Pandas 3.0! | |
| mode: 'upsert' |