Skip to content

Issues: KrishnaswamyLab/PHATE

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

29 Open 51 Closed
29 Open 51 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

EBdata used for trajectory inference？ question
#150 opened Dec 27, 2024 by Han-zh210
Phate using harmony reduction question
#149 opened Dec 23, 2024 by wiktormiko
1
How does PHATE handle new data? question
#147 opened Nov 9, 2024 by Mr-Byun
Regarding initialization in PHATE question
#146 opened Sep 6, 2024 by JayaniLakshika
1
What is happening in mds.method = "classic"? question
#145 opened Sep 6, 2024 by JayaniLakshika
Providing init to the phateR implementation only saves up time if only the parameter t is changing but not other parameters? question
#143 opened Apr 16, 2024 by erzakiev
1
Intrinsic dimension of PHATE embedding identifes branches question
#142 opened Mar 28, 2024 by YYT1002
Support more graphs for phate.fit enhancement
#141 opened Dec 9, 2023 by dsm-72
Error: TypeError: __init__() got an unexpected keyword argument 'k' question
#140 opened Sep 22, 2023 by handesome
Cannot import phate: numpy version? bug
#136 opened Apr 22, 2023 by haoqichen20
1
destination is read-only bug
#134 opened Mar 21, 2023 by AndrewSkelton
Application of PHATE to Visium 10x data enhancement
#133 opened Mar 20, 2023 by tyaoi
cell type annotations of EB question
#128 opened Feb 8, 2023 by ShobiStassen
Recommended minimum number of cells to run PHATE? question
#127 opened Jan 29, 2023 by kuang-da
cell-cycle & mitochondrial regression question
#126 opened Jan 4, 2023 by kvshams
2
Adding cell id (input rowname) in PHATE output (Y_phate in python tutorial :EmbryoidBody) enhancement
#121 opened Dec 7, 2022 by parkjooyoung99
Update bioconda enhancement
#120 opened Nov 10, 2022 by dsm-72
1
T-PHATE algorithm question
#115 opened Jun 6, 2022 by apathanasiadis
MDS smacof n_jobs argument bug
#112 opened Mar 3, 2022 by choltz95
1
SVD computation error message bug
#108 opened Jun 10, 2021 by ivan-marroquin
Be able to use minkowski metric with p < 1 enhancement
#107 opened Jun 10, 2021 by ivan-marroquin
2
RE: input data for PHATE question
#105 opened Apr 22, 2021 by vravik
Reproducing Supplementary Figure 13 in paper and general re-weighting procedure question
#99 opened Nov 6, 2020 by jashahir
s_gd2 typeerror bug
#95 opened Jun 30, 2020 by scottgigante
@scottgigante
13
Totally different result between phateR and RunPHATE question
#93 opened Jun 12, 2020 by qiuhuiqq
2
ProTip! Adding no:label will show everything without a label.