Merge remote-tracking branch 'origin/master' into docs/structured_doc

.github/CODEOWNERS

@@ -32,3 +32,4 @@
 /applications/MultilevelMonteCarloApplication/         @KratosMultiphysics/uncertainty-quantification
 /applications/ParticleMechanicsApplication/            @KratosMultiphysics/mpm
 /applications/RomApplication/                          @KratosMultiphysics/rom
+/applications/GeoMechanicsApplication/.................@KratosMultiphysics/geomechanics

.github/ISSUE_TEMPLATE/todo.md

@@ -4,9 +4,9 @@ about: List of things that are pending TO DO
 ---
 
 **Description**
-Description of what is the pourpose of this issue, which willl consist in a list of pending tasks 
+Description of what is the pourpose of this issue, which will consist in a list of pending tasks 
 
 **TODO**
-[ ] Update XX library
-[ ] Refactor YY class
-[ ] Document ZZ implementation
+- [ ] Update XX library
+- [ ] Refactor YY class
+- [ ] Document ZZ implementation

.github/workflows/build_docker_image_wheelbuilder_linux.yml

@@ -9,6 +9,9 @@ on:
       - 'scripts/docker_files/docker_file_wheelbuilder_linux/*'
       - '.github/workflows/build_docker_image_wheelbuilder_linux.yml'
 
+permissions:
+  contents: read
+
 jobs:
   build:
     runs-on: ubuntu-latest

.github/workflows/build_docker_image_wheelbuilder_windows.yml

@@ -9,6 +9,9 @@ on:
       - 'scripts/docker_files/docker_file_wheelbuilder_windows/*'
       - '.github/workflows/build_docker_image_wheelbuilder_windows.yml'
 
+permissions:
+  contents: read
+
 jobs:
   build:
     runs-on: windows-latest

.github/workflows/build_docker_images_for_ci.yml

@@ -7,25 +7,35 @@ on:
     branches:
       - 'master'
     paths:
-      - 'scripts/docker_files/docker_file_ci_ubuntu_20_04/*'
-      - 'scripts/docker_files/docker_file_ci_centos_7_python35/*'
+      - 'scripts/docker_files/docker_file_ci_ubuntu_22_04/*'
+      - 'scripts/docker_files/docker_file_ci_centos_7/*'
       - '.github/workflows/build_docker_images_for_ci.yml'
   pull_request:
     branches:
       - 'master'
     paths:
-      - 'scripts/docker_files/docker_file_ci_ubuntu_20_04/*'
-      - 'scripts/docker_files/docker_file_ci_centos_7_python35/*'
+      - 'scripts/docker_files/docker_file_ci_ubuntu_22_04/*'
+      - 'scripts/docker_files/docker_file_ci_centos_7/*'
       - '.github/workflows/build_docker_images_for_ci.yml'
 
+  workflow_dispatch:
+
+# for cancelling redundant runs
+concurrency:
+  group: ci-${{ github.head_ref }}
+  cancel-in-progress: true
+
+permissions:
+  contents: read
+
 jobs:
-  build-docker-ubuntu:
+  build-docker-ubuntu-jammy:
     runs-on: ubuntu-latest
 
     steps:
     - uses: actions/checkout@v3
     - name: Build the Docker image
-      run: docker build . --file scripts/docker_files/docker_file_ci_ubuntu_20_04/DockerFile --tag kratosmultiphysics/kratos-image-ci-ubuntu-20-04
+      run: docker build . --file scripts/docker_files/docker_file_ci_ubuntu_22_04/DockerFile --tag kratosmultiphysics/kratos-image-ci-ubuntu-22-04
     - name: Docker Login
       uses: azure/docker-login@v1
       with:
@@ -34,15 +44,15 @@ jobs:
     - name: Publish the Docker image
       if: ${{ github.event_name == 'push'}}
       # only push the new image when the changes are merged to master
-      run: docker push kratosmultiphysics/kratos-image-ci-ubuntu-20-04
+      run: docker push kratosmultiphysics/kratos-image-ci-ubuntu-22-04
 
   build-docker-centos:
     runs-on: ubuntu-latest
 
     steps:
     - uses: actions/checkout@v3
     - name: Build the Docker image
-      run: docker build . --file scripts/docker_files/docker_file_ci_centos_7_python35/DockerFile --tag kratosmultiphysics/kratos-image-ci-centos7-python35
+      run: docker build . --file scripts/docker_files/docker_file_ci_centos_7/DockerFile --tag kratosmultiphysics/kratos-image-ci-centos7
     - name: Docker Login
       uses: azure/docker-login@v1
       with:
@@ -51,4 +61,4 @@ jobs:
     - name: Publish the Docker image
       if: ${{ github.event_name == 'push'}}
       # only push the new image when the changes are merged to master
-      run: docker push kratosmultiphysics/kratos-image-ci-centos7-python35
+      run: docker push kratosmultiphysics/kratos-image-ci-centos7

.github/workflows/build_docker_images_with_kratos.yml

@@ -11,6 +11,9 @@ on:
   schedule:
     - cron: '0 0 * * *' # update it every night
 
+permissions:
+  contents: read
+
 jobs:
   build:
     runs-on: ubuntu-latest

.github/workflows/centos_configure.sh

@@ -5,7 +5,7 @@
 #   - https://github.com/KratosMultiphysics/Kratos
 
 # Optional parameters:
-# You can find a list will all the compiation options in INSTALL.md or here:
+# You can find a list with all the compilation options in INSTALL.md or here:
 #   - https://github.com/KratosMultiphysics/Kratos/wiki/Compilation-options
 
 add_app () {
@@ -34,13 +34,16 @@ rm -rf "${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}/CMakeFiles"
 
 echo "Kratos build type is ${KRATOS_BUILD_TYPE}"
 
+# Enable devtoolset-8
+source scl_source enable devtoolset-8
+
 # Configure
 cmake -H"${KRATOS_SOURCE}" -B"${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}" \
 ${KRATOS_CMAKE_OPTIONS_FLAGS} \
 -DUSE_MPI=OFF \
--DPYBIND11_PYTHON_VERSION="3.5" \
--DCMAKE_CXX_FLAGS="${KRATOS_CMAKE_CXX_FLAGS} -std=c++11 -O0 -Wall" \
+-DPYBIND11_PYTHON_VERSION="3.8" \
+-DCMAKE_CXX_FLAGS="${KRATOS_CMAKE_CXX_FLAGS} -O0 -Wall" \
 -DCMAKE_UNITY_BUILD=ON                              \
 
-# Buid
+# Build
 cmake --build "${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}" --target install -- -j2

.github/workflows/ci-dummy.yml

@@ -0,0 +1,38 @@
+name: CI
+
+# this is required to satisfy the required checks by replacing them with dummy checks
+# see https://docs.github.com/en/repositories/configuring-branches-and-merges-in-your-repository/defining-the-mergeability-of-pull-requests/troubleshooting-required-status-checks#handling-skipped-but-required-checks
+
+on:
+  pull_request:
+    branches:
+      - master
+    paths:              # This must be the same as .github/workflows/ci.yml - "paths-ignore" !
+      - '**.md'
+      - 'documents/**'
+      - 'scripts/**'
+      - '.github/workflows/ci-dummy.yml'
+      - '.github/workflows/build_docker_image*.yml'
+      - '.github/workflows/nightly_build.yml'
+      - 'kratos/templates/**'
+      - 'kratos/python_scripts/application_generator/**'
+
+permissions:
+  contents: read
+
+jobs:
+  ubuntu:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        build-type: [Custom, FullDebug]
+        compiler: [gcc, clang]
+    steps:
+    - run: 'echo "Dummy build, no checks executed ..."'
+
+  windows:
+    runs-on: ubuntu-latest # ubuntu is faster than Win, hence no point using Win here
+
+    steps:
+    - run: 'echo "Dummy build, no checks executed ..."'