fixes bug in uniref parsing that had parser going for all entries at … #27
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| name: website | |
| # build the documentation whenever there are new commits on main | |
| on: | |
| push: | |
| branches: | |
| - main | |
| # Alternative: only build for tags. | |
| # tags: | |
| # - '*' | |
| jobs: | |
| build-docs: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write # This line is crucial | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Go | |
| uses: actions/setup-go@v2 | |
| with: | |
| go-version: '1.22' | |
| - name: Install Zig | |
| uses: goto-bus-stop/setup-zig@v2 | |
| with: | |
| version: 0.11.0 | |
| - name: Build Go shared library | |
| working-directory: ./py | |
| run: | |
| CC="zig cc -target x86_64-linux-gnu" CGO_ENABLED=1 GOOS=linux GOARCH=amd64 go build -o dnadesign/libdnadesign.so -buildmode=c-shared lib.go | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' # Specify the Python version you're using | |
| - name: Build wheel | |
| working-directory: ./py | |
| run: | | |
| pip install wheel packaging setuptools cffi | |
| python setup.py bdist_wheel --plat-name manylinux2014_x86_64 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pdoc3 # Install pdoc3 | |
| pip install -e ./py # Install your package in editable mode | |
| - name: Generate documentation | |
| run: | | |
| python -m venv test_env | |
| source test_env/bin/activate | |
| pip install ./py/dist/*.whl | |
| python -c "from dnadesign import parsers; print('Library loaded successfully')" | |
| pip install pdoc | |
| pdoc ./py/dnadesign -o ./docs | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v2 | |
| with: | |
| path: './docs' # Adjust this to your build output directory | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| if: github.ref == 'refs/heads/main' | |
| uses: actions/deploy-pages@v2 |