parts #364
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| on: | |
| push: | |
| tags: | |
| - v* | |
| branches: | |
| - main | |
| pull_request: | |
| name: Test | |
| jobs: | |
| test-lib: | |
| strategy: | |
| matrix: | |
| go-version: [1.21.x,] | |
| platform: [ubuntu-latest, macos-latest] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - name: Install Go | |
| uses: actions/setup-go@v2 | |
| with: | |
| go-version: ${{ matrix.go-version }} | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Test | |
| run: go test -v ./lib/... | |
| test-external: | |
| strategy: | |
| matrix: | |
| go-version: [1.21.x,] | |
| platform: [ubuntu-latest] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - name: Install Go | |
| uses: actions/setup-go@v2 | |
| with: | |
| go-version: ${{ matrix.go-version }} | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Download minimap2 | |
| run: | | |
| curl -L https://github.com/lh3/minimap2/releases/download/v2.26/minimap2-2.26_x64-linux.tar.bz2 | tar -jxvf - | |
| mkdir -p $HOME/bin | |
| cp ./minimap2-2.26_x64-linux/minimap2 $HOME/bin | |
| echo "$HOME/bin" >> $GITHUB_PATH | |
| - name: Install dependencies for samtools and bcftools | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libncurses5-dev libbz2-dev liblzma-dev zlib1g-dev libcurl4-openssl-dev | |
| - name: Download and install samtools | |
| run: | | |
| curl -L https://github.com/samtools/samtools/releases/download/1.13/samtools-1.13.tar.bz2 | tar -jxvf - | |
| cd samtools-1.13 | |
| ./configure --prefix=$HOME/samtools | |
| make | |
| make install | |
| echo "$HOME/samtools/bin" >> $GITHUB_PATH | |
| - name: Download and install bcftools | |
| run: | | |
| git clone --recurse-submodules https://github.com/samtools/htslib.git | |
| git clone https://github.com/samtools/bcftools.git | |
| cd bcftools | |
| make | |
| sudo make install | |
| - name: Test external | |
| run: go test -v ./external/... | |
| openbsd-test: | |
| runs-on: ubuntu-latest | |
| name: 1.21.5 openbsd | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Run OpenBSD tests | |
| uses: vmactions/openbsd-vm@v1 | |
| with: | |
| prepare: | | |
| pkg_add curl | |
| curl -L https://dl.google.com/go/go1.21.5.openbsd-amd64.tar.gz -o go1.21.5.openbsd-amd64.tar.gz | |
| tar -C /usr/local -xzf go1.21.5.openbsd-amd64.tar.gz | |
| export PATH=$PATH:/usr/local/go/bin | |
| go install golang.org/x/tools/cmd/goimports@latest | |
| run: | | |
| export PATH=$PATH:/usr/local/go/bin | |
| go test -v ./lib/... |