Replace CDATE with PDYcyc combo (NOAA-EMC#1561)

Replaces `${CDATE}` with `${PDY}${cyc}` in all `config.*` files. Also fixes permissions on some of the config files that were turned to be executable in some of the JEDI PRs.

Fixes NOAA-EMC#1560 
Partially fixes NOAA-EMC#198

parm/config/config.anal

@@ -54,41 +54,41 @@ export OBERROR=${FIXgsi}/prepobs_errtable.global
 # Use experimental dumps in EMC GFS v16 parallels
 if [[ ${RUN_ENVIR} == "emc" ]]; then
   #   Set info files and prepobs.errtable.global for GFS v16 retrospective parallels
-  if [[ "${CDATE}" -ge "2019021900" && "${CDATE}" -lt "2019110706" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2019021900" && "${PDY}${cyc}" -lt "2019110706" ]]; then
     export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2019021900
     export OBERROR=${FIXgsi}/gfsv16_historical/prepobs_errtable.global.2019021900
   fi
 
   #   Place GOES-15 AMVs in monitor, assimilate GOES-17 AMVs, assimilate KOMPSAT-5 gps
-  if [[ "${CDATE}" -ge "2019110706" && "${CDATE}" -lt "2020040718" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2019110706" && "${PDY}${cyc}" -lt "2020040718" ]]; then
     export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2019110706
     export OBERROR=${FIXgsi}/gfsv16_historical/prepobs_errtable.global.2019110706
   fi
 
   #   Assimilate 135 (T) & 235 (uv) Canadian AMDAR observations
-  if [[ "${CDATE}" -ge "2020040718" && "${CDATE}" -lt "2020052612" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2020040718" && "${PDY}${cyc}" -lt "2020052612" ]]; then
     export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2020040718
     export OBERROR=${FIXgsi}/gfsv16_historical/prepobs_errtable.global.2020040718
   fi
 
   #   Assimilate COSMIC-2
-  if [[ "${CDATE}" -ge "2020052612" && "${CDATE}" -lt "2020082412" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2020052612" && "${PDY}${cyc}" -lt "2020082412" ]]; then
     export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2020052612
     export OBERROR=${FIXgsi}/gfsv16_historical/prepobs_errtable.global.2020040718
   fi
 
   #   Assimilate HDOB
-  if [[ "${CDATE}" -ge "2020082412" && "${CDATE}" -lt "2020091612" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2020082412" && "${PDY}${cyc}" -lt "2020091612" ]]; then
     export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2020082412
   fi
 
   #   Assimilate Metop-C GNSSRO
-  if [[ "${CDATE}" -ge "2020091612" && "${CDATE}" -lt "2021031712" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2020091612" && "${PDY}${cyc}" -lt "2021031712" ]]; then
     export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2020091612
   fi
 
   #   Assimilate DO-2 GeoOptics
-  if [[ "${CDATE}" -ge "2021031712" && "${CDATE}" -lt "2021091612" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2021031712" && "${PDY}${cyc}" -lt "2021091612" ]]; then
     export CONVINFO=${FIXgsi}/gfsv16_historical/global_convinfo.txt.2021031712
   fi
 
@@ -97,38 +97,38 @@ if [[ ${RUN_ENVIR} == "emc" ]]; then
   #   identical to ../global_convinfo.txt.  Thus, the logic below is not
   #   needed at this time.
   #   Assimilate COSMIC-2 GPS
-  #   if [[ "$CDATE" -ge "2021110312" && "$CDATE" -lt "YYYYMMDDHH" ]]; then
+  #   if [[ "${PDY}${cyc}" -ge "2021110312" && "${PDY}${cyc}" -lt "YYYYMMDDHH" ]]; then
   #   export CONVINFO=$FIXgsi/gfsv16_historical/global_convinfo.txt.2021110312
   #   fi
 
   #   Turn off assmilation of OMPS during period of bad data
-  if [[ "${CDATE}" -ge "2020011600" && "${CDATE}" -lt "2020011806" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2020011600" && "${PDY}${cyc}" -lt "2020011806" ]]; then
     export OZINFO=${FIXgsi}/gfsv16_historical/global_ozinfo.txt.2020011600
   fi
 
 
   #   Set satinfo for start of GFS v16 parallels
-  if [[ "${CDATE}" -ge "2019021900" && "${CDATE}" -lt "2019110706" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2019021900" && "${PDY}${cyc}" -lt "2019110706" ]]; then
     export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2019021900
   fi
 
   #   Turn on assimilation of Metop-C AMSUA and MHS
-  if [[ "${CDATE}" -ge "2019110706" && "${CDATE}" -lt "2020022012" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2019110706" && "${PDY}${cyc}" -lt "2020022012" ]]; then
     export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2019110706
   fi
 
   #   Turn off assimilation of Metop-A MHS
-  if [[ "${CDATE}" -ge "2020022012" && "${CDATE}" -lt "2021052118" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2020022012" && "${PDY}${cyc}" -lt "2021052118" ]]; then
     export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2020022012
   fi
 
   #   Turn off assimilation of S-NPP CrIS
-  if [[ "${CDATE}" -ge "2021052118" && "${CDATE}" -lt "2021092206" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2021052118" && "${PDY}${cyc}" -lt "2021092206" ]]; then
     export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2021052118
   fi
 
   #   Turn off assimilation of MetOp-A IASI
-  if [[ "${CDATE}" -ge "2021092206" && "${CDATE}" -lt "2021102612" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2021092206" && "${PDY}${cyc}" -lt "2021102612" ]]; then
     export SATINFO=${FIXgsi}/gfsv16_historical/global_satinfo.txt.2021092206
   fi
 
@@ -138,7 +138,7 @@ if [[ ${RUN_ENVIR} == "emc" ]]; then
   #   needed at this time
   #
   #   Turn off assmilation of all Metop-A MHS
-  #   if [[ "$CDATE" -ge "2021110312" && "$CDATE" -lt "YYYYMMDDHH" ]]; then
+  #   if [[ "${PDY}${cyc}" -ge "2021110312" && "${PDY}${cyc}" -lt "YYYYMMDDHH" ]]; then
   #     export SATINFO=$FIXgsi/gfsv16_historical/global_satinfo.txt.2021110312
   #   fi
 fi

parm/config/config.base.emc.dyn

@@ -104,7 +104,7 @@ export EXPDIR="@EXPDIR@/${PSLOT}"
 export ROTDIR="@ROTDIR@/${PSLOT}"
 export ROTDIR_DUMP="YES"                #Note: A value of "NO" does not currently work
 export DUMP_SUFFIX=""
-if [[ "${CDATE}" -ge "2019092100" && "${CDATE}" -le "2019110700" ]]; then
+if [[ "${PDY}${cyc}" -ge "2019092100" && "${PDY}${cyc}" -le "2019110700" ]]; then
     export DUMP_SUFFIX="p"              # Use dumps from NCO GFS v15.3 parallel
 fi
 export DATAROOT="${STMP}/RUNDIRS/${PSLOT}"  # TODO: set via prod_envir in Ops
@@ -335,7 +335,7 @@ if [[ ${DOHYBVAR} == "NO" && ${DOIAU} == "YES"  ]]; then
 fi
 
 # Check if cycle is cold starting, DOIAU off, or free-forecast mode
-if [[ "${MODE}" = "cycled" && "${SDATE}" = "${CDATE}" && ${EXP_WARM_START} = ".false." ]] || [[ "${DOIAU}" = "NO" ]] || [[ "${MODE}" = "forecast-only" && ${EXP_WARM_START} = ".false." ]] ; then
+if [[ "${MODE}" = "cycled" && "${SDATE}" = "${PDY}${cyc}" && ${EXP_WARM_START} = ".false." ]] || [[ "${DOIAU}" = "NO" ]] || [[ "${MODE}" = "forecast-only" && ${EXP_WARM_START} = ".false." ]] ; then
   export IAU_OFFSET=0
   export IAU_FHROT=0
 fi

parm/config/config.getic

@@ -6,7 +6,7 @@
 echo "BEGIN: config.getic"
 
 # Get task specific resources
-. $EXPDIR/config.resources getic
+. ${EXPDIR}/config.resources getic
 
 export RETRO="NO" # YES = Pull v16 inputs from retrospective parallels; NO = use operational inputs
 export gfs_ver="v16" # Default = v16
@@ -18,41 +18,41 @@ export GDASINIT_DIR=${UFS_DIR}/util/gdas_init
 export PRODHPSSDIR=/NCEPPROD/hpssprod/runhistory
 export GETICSH=${GDASINIT_DIR}/get_v16.data.sh
 
-if [ ${RETRO:-"NO"} = "YES" ]; then # Retrospective parallel input
+if [[ ${RETRO:-"NO"} = "YES" ]]; then # Retrospective parallel input
   export GETICSH=${GDASINIT_DIR}/get_v16retro.data.sh
-  if [[ "$CDATE" -lt "2019060106" ]]; then
+  if [[ "${PDY}${cyc}" -lt "2019060106" ]]; then
     HPSSDIR=/NCEPDEV/emc-global/5year/emc.glopara/WCOSS_D/gfsv16/v16retro0e
-  elif [[ "$CDATE" -lt "2019090100" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2019090100" ]]; then
     HPSSDIR=/NCEPDEV/emc-global/5year/emc.glopara/WCOSS_D/gfsv16/v16retro1e
-  elif [[ "$CDATE" -lt "2019101706" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2019101706" ]]; then
     HPSSDIR=/NCEPDEV/emc-global/5year/emc.glopara/WCOSS_D/gfsv16/v16retro2e
-  elif [[ "$CDATE" -lt "2020122200" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2020122200" ]]; then
     HPSSDIR=/NCEPDEV/emc-global/5year/emc.glopara/WCOSS_D/gfsv16/v16rt2
-  elif [[ "$CDATE" -le "2021032506" ]]; then
+  elif [[ "${PDY}${cyc}" -le "2021032506" ]]; then
     HPSSDIR=/NCEPDEV/emc-global/5year/emc.glopara/WCOSS_D/gfsv16/v16rt2n
   else
     set +x
-    echo NO DATA FOR $CDATE
+    echo NO DATA FOR "${PDY}${cyc}"
     exit 3
   fi
-elif [ ${RETRO:-"NO"} = "NO" ]; then # Operational input
+elif [[ ${RETRO:-"NO"} = "NO" ]]; then # Operational input
   # No ENKF data prior to 2012/05/21/00z
-  if [[ "$CDATE" -lt "2012052100" ]]; then
+  if [[ "${PDY}${cyc}" -lt "2012052100" ]]; then
     set +x
     echo FATAL ERROR: SCRIPTS DO NOT SUPPORT OLD GFS DATA
-  elif [[ "$CDATE" -lt "2016051000" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2016051000" ]]; then
     export gfs_ver=v12
     export GETICSH=${GDASINIT_DIR}/get_pre-v14.data.sh
-  elif [[ "$CDATE" -lt "2017072000" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2017072000" ]]; then
     export gfs_ver=v13
     export GETICSH=${GDASINIT_DIR}/get_pre-v14.data.sh
-  elif [[ "$CDATE" -lt "2019061200" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2019061200" ]]; then
     export gfs_ver=v14
     export GETICSH=${GDASINIT_DIR}/get_${gfs_ver}.data.sh
-  elif [[ "$CDATE" -lt "2021032100" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2021032100" ]]; then
     export gfs_ver=v15
     export GETICSH=${GDASINIT_DIR}/get_${gfs_ver}.data.sh
-  elif [[ "$CDATE" -lt "2021032106" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2021032106" ]]; then
     # The way the v16 switch over was done, there is no complete
     # set of v16 or v15 data for 2021032100.  And although
     # v16 was officially implemented 2021032212, the v16 prod

parm/config/config.init

@@ -23,24 +23,24 @@ if [ "${RETRO:-"NO"}" = "YES" ] || [ "$CDUMP" = "gdas" ]; then
   export RUNICSH=${GDASINIT_DIR}/run_v16retro.chgres.sh
 fi
 
-if [ ${RETRO:-"NO"} = "NO" ]; then # Operational input
+if [[ ${RETRO:-"NO"} = "NO" ]]; then # Operational input
   # No ENKF data prior to 2012/05/21/00z
-  if [[ "$CDATE" -lt "2012052100" ]]; then
+  if [[ "${PDY}${cyc}" -lt "2012052100" ]]; then
     set +x
     echo FATAL ERROR: SCRIPTS DO NOT SUPPORT OLD GFS DATA
-  elif [[ "$CDATE" -lt "2016051000" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2016051000" ]]; then
     export gfs_ver=v12
     export RUNICSH=${GDASINIT_DIR}/run_pre-v14.chgres.sh
-  elif [[ "$CDATE" -lt "2017072000" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2017072000" ]]; then
     export gfs_ver=v13
     export RUNICSH=${GDASINIT_DIR}/run_pre-v14.chgres.sh
-  elif [[ "$CDATE" -lt "2019061200" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2019061200" ]]; then
     export gfs_ver=v14
     export RUNICSH=${GDASINIT_DIR}/run_${gfs_ver}.chgres.sh
-  elif [[ "$CDATE" -lt "2021032100" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2021032100" ]]; then
     export gfs_ver=v15
     export RUNICSH=${GDASINIT_DIR}/run_${gfs_ver}.chgres.gfs.sh
-  elif [[ "$CDATE" -lt "2021032106" ]]; then
+  elif [[ "${PDY}${cyc}" -lt "2021032106" ]]; then
     # The way the v16 switch over was done, there is no complete
     # set of v16 or v15 data for 2021032100.  And although
     # v16 was officially implemented 2021032212, the v16 prod

parm/config/config.nsst

@@ -12,7 +12,7 @@ export NST_MODEL=2
 
 # nstf_name(2) : NST_SPINUP : 0 = OFF, 1 = ON,
 export NST_SPINUP=0
-if [[ "$CDATE" -lt "2017072000" ]]; then
+if [[ "${PDY}${cyc}" -lt "2017072000" ]]; then
     export NST_SPINUP=1
 fi
 

parm/config/config.prep

@@ -36,12 +36,12 @@ export PRVT=$FIXgsi/prepobs_errtable.global
 
 # Set prepobs.errtable.global for GFS v16 retrospective parallels
 if [[ $RUN_ENVIR == "emc" ]]; then
-  if [[ "$CDATE" -ge "2019021900" && "$CDATE" -lt "2019110706" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2019021900" && "${PDY}${cyc}" -lt "2019110706" ]]; then
     export PRVT=$FIXgsi/gfsv16_historical/prepobs_errtable.global.2019021900
   fi
 
 #   Place GOES-15 AMVs in monitor, assimilate GOES-17 AMVs, assimilate KOMPSAT-5 gps
-  if [[ "$CDATE" -ge "2019110706" && "$CDATE" -lt "2020040718" ]]; then
+  if [[ "${PDY}${cyc}" -ge "2019110706" && "${PDY}${cyc}" -lt "2020040718" ]]; then
     export PRVT=$FIXgsi/gfsv16_historical/prepobs_errtable.global.2019110706
   fi
 
@@ -51,7 +51,7 @@ if [[ $RUN_ENVIR == "emc" ]]; then
 #   needed at this time
 
 #   Set observation errors for type 135 (T) & 235 (uv) Canadian AMDAR observations
-#   if [[ "$CDATE" -ge "2020040718" && "$CDATE" -lt "YYYMMDDHH" ]]; then
+#   if [[ "${PDY}${cyc}" -ge "2020040718" && "${PDY}${cyc}" -lt "YYYMMDDHH" ]]; then
 #     export PRVT=$EXPDIR/prepobs_errtable.global
 #   fi
 
@@ -60,7 +60,7 @@ fi
 # NSST bufr was created with a different set of files prior to 2020102200
 # See comments at the end of
 # https://github.com/NOAA-EMC/global-workflow/issues/313
-if [[ "$CDATE" -ge "2020102200" ]]; then
+if [[ "${PDY}${cyc}" -ge "2020102200" ]]; then
   export DTYPS_nsst='sfcshp tesac bathy trkob'
 else
   export DTYPS_nsst='sfcshp dbuoyb mbuoyb tesac bathy trkob'