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Welcome to the zol (&fai) wiki!

Interested in finding homologous instances of a gene-cluster in target genomes? Check out how to prepare target genomes and perform such searches on the prepTG and fai wiki pages.

Interested in evolutionary analysis of a set of related gene-clusters in GenBank format with CDS features available? Check out the zol wiki page.

Contents

0. overview of major result files

1. more info on prepTG

2. more info on fai

3. more info on zol

4. basic usage examples

4.1 selecting parameters for fai and zol

5. tutorial ‐ a detailed walkthrough

5.1 tutorial for using zol with output from fast.genomics and CAGECAT

5.2 tips and recs for gene cluster neighborhood visualization

5.3 visualization of 1000s of gene clusters using cgc

5.4 horizontal or lateral transfer assessment of gene clusters using salt

6. dependencies

7. premade prepTG dbs

8. overview of prior updates

9. more info on assessing BGC-ome novelty for a strain using abon

9.2 more info on assessing phage-ome novelty for a strain using atpoc

9.3 more info on assessing plasmid-ome novelty for a strain using apos