build based on 01d964b

previews/PR187/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-11-27T13:05:57","documenter_version":"1.8.0"}}
+{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-11-27T14:29:49","documenter_version":"1.8.0"}}

previews/PR187/generated/cascading_failure/index.html

@@ -70,4 +70,4 @@
 Line 4 tripped at t=2.502523192233235
 Line 1 tripped at t=3.1947647115093654
 Line 3 tripped at t=3.3380530127462587
-Line 2 tripped at t=3.4042696241577888</code></pre><p>Through the magic of symbolic indexing we can plot the power flows on all lines:</p><pre><code class="language-julia hljs">plot(sol; idxs=eidxs(sol,:,:P))</code></pre><img src="a6250fb5.svg" alt="Example block output"/><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../heterogeneous_system/">« Heterogeneous Systems</a><a class="docs-footer-nextpage" href="../stress_on_truss/">Stress on Truss »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Wednesday 27 November 2024 13:05">Wednesday 27 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+Line 2 tripped at t=3.4042696241577888</code></pre><p>Through the magic of symbolic indexing we can plot the power flows on all lines:</p><pre><code class="language-julia hljs">plot(sol; idxs=eidxs(sol,:,:P))</code></pre><img src="1378455c.svg" alt="Example block output"/><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../heterogeneous_system/">« Heterogeneous Systems</a><a class="docs-footer-nextpage" href="../stress_on_truss/">Stress on Truss »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Wednesday 27 November 2024 14:29">Wednesday 27 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR187/generated/directed_and_weighted_graphs/index.html

@@ -45,4 +45,4 @@
 Edge-Aggregation using SequentialAggregator(+)</code></pre><p>Since this system is a directed one with thus directed edges, the keyword argument <code>coupling</code> is used to set the coupling of the edges to <code>Directed()</code>.</p><h2 id="Parameter-handling"><a class="docs-heading-anchor" href="#Parameter-handling">Parameter handling</a><a id="Parameter-handling-1"></a><a class="docs-heading-anchor-permalink" href="#Parameter-handling" title="Permalink"></a></h2><p>Some of the parameters have been declared with default values. Those default values will be used when creating the <code>NWParameter</code> object. We can use getindex on the parameter objects to set the missing weight values.</p><pre><code class="language-julia hljs">p = NWParameter(fhn_network!)
 p.e[1:ne(g_directed), :weight] = edge_weights</code></pre><p>The initial conditions could be created similarly to the parameters as an indexable <code>NWState</code> obejct. Since we chose a random initial condition we initialize the flat array directly:</p><pre><code class="language-julia hljs">x0 = randn(StableRNG(42), dim(fhn_network!)) * 5</code></pre><h2 id="Solving-the-system"><a class="docs-heading-anchor" href="#Solving-the-system">Solving the system</a><a id="Solving-the-system-1"></a><a class="docs-heading-anchor-permalink" href="#Solving-the-system" title="Permalink"></a></h2><p>Now we are ready to create an <code>ODEProblem</code>. Since for some choices of parameters the FitzHugh-Nagumo model is <em>stiff</em> (i.e. numerically unstable), we use a solver with automated stiffness detection. Such a solver switches to a more stable solver only when the solution enters a region of phase space where the problem is numerically unstable. In this case we use <code>Tsit5</code> and switch to <code>TRBDF2</code> when necessary. <code>AutoTsit5</code> is the switching version of the <code>Tsit5</code> algorithm.</p><p>Not that we call <code>pflat</code> on the <code>NWParameter</code> object to get the flat array of parameters.</p><pre><code class="language-julia hljs">tspan = (0.0, 200.0)
 prob  = ODEProblem(fhn_network!, x0, tspan, pflat(p))
-sol = solve(prob, AutoTsit5(TRBDF2()));</code></pre><h2 id="Plotting"><a class="docs-heading-anchor" href="#Plotting">Plotting</a><a id="Plotting-1"></a><a class="docs-heading-anchor-permalink" href="#Plotting" title="Permalink"></a></h2><p>The plot of the excitatory variables shows that they synchronize for this choice of parameters.</p><pre><code class="language-julia hljs">plot(sol; idxs=vidxs(fhn_network!, :, :u), legend=false, ylim=(-5, 5), fmt=:png)</code></pre><img src="5fb21645.svg" alt="Example block output"/><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../getting_started_with_network_dynamics/">« Getting Started</a><a class="docs-footer-nextpage" href="../heterogeneous_system/">Heterogeneous Systems »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Wednesday 27 November 2024 13:05">Wednesday 27 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+sol = solve(prob, AutoTsit5(TRBDF2()));</code></pre><h2 id="Plotting"><a class="docs-heading-anchor" href="#Plotting">Plotting</a><a id="Plotting-1"></a><a class="docs-heading-anchor-permalink" href="#Plotting" title="Permalink"></a></h2><p>The plot of the excitatory variables shows that they synchronize for this choice of parameters.</p><pre><code class="language-julia hljs">plot(sol; idxs=vidxs(fhn_network!, :, :u), legend=false, ylim=(-5, 5), fmt=:png)</code></pre><img src="5cb0671a.svg" alt="Example block output"/><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../getting_started_with_network_dynamics/">« Getting Started</a><a class="docs-footer-nextpage" href="../heterogeneous_system/">Heterogeneous Systems »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Wednesday 27 November 2024 14:29">Wednesday 27 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR187/generated/gas_network/index.html

@@ -221,4 +221,4 @@
     end
     axislegend(ax, position=:rb)
     _fig
-end</code></pre><img src="43f744c5.svg" alt="Example block output"/><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../stress_on_truss/">« Stress on Truss</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Wednesday 27 November 2024 13:05">Wednesday 27 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+end</code></pre><img src="43f744c5.svg" alt="Example block output"/><hr/><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../stress_on_truss/">« Stress on Truss</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Wednesday 27 November 2024 14:29">Wednesday 27 November 2024</span>. Using Julia version 1.11.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>