Search floating mode

.github/workflows/deployment-arm64.yml

@@ -141,6 +141,8 @@ jobs:
           --java-options --add-opens=javafx.graphics/javafx.scene=org.jabref \
           --java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref \
           --java-options --add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref \
+          --java-options --add-opens=javafx.base/javafx.collections=org.jabref \
+          --java-options --add-opens=javafx.base/javafx.collections.transformation=org.jabref \
           --java-options --add-modules=jdk.incubator.vector
       - name: Build pkg (macOS)
         if: (steps.checksecrets.outputs.secretspresent == 'YES')
@@ -179,6 +181,8 @@ jobs:
           --java-options --add-opens=javafx.graphics/javafx.scene=org.jabref \
           --java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref \
           --java-options --add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref \
+          --java-options --add-opens=javafx.base/javafx.collections=org.jabref \
+          --java-options --add-opens=javafx.base/javafx.collections.transformation=org.jabref \
           --java-options --add-modules=jdk.incubator.vector
       - name: Rename files with arm64 suffix as well
         if: (steps.checksecrets.outputs.secretspresent == 'YES')

.github/workflows/deployment.yml

@@ -153,6 +153,8 @@ jobs:
           --java-options --add-opens=javafx.graphics/javafx.scene=org.jabref \
           --java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref \
           --java-options --add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref \
+          --java-options --add-opens=javafx.base/javafx.collections=org.jabref \
+          --java-options --add-opens=javafx.base/javafx.collections.transformation=org.jabref \
           --java-options --add-modules=jdk.incubator.vector
       - name: Build pkg (macOS)
         if: (matrix.os == 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')
@@ -192,6 +194,8 @@ jobs:
           --java-options --add-opens=javafx.graphics/javafx.scene=org.jabref \
           --java-options --add-opens=javafx.controls/javafx.scene.control=org.jabref \
           --java-options --add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref \
+          --java-options --add-opens=javafx.base/javafx.collections=org.jabref \
+          --java-options --add-opens=javafx.base/javafx.collections.transformation=org.jabref \
           --java-options --add-modules=jdk.incubator.vector
       - name: Build runtime image and installer (linux, Windows)
         if: (matrix.os != 'macos-13') && (steps.checksecrets.outputs.secretspresent == 'YES')

CHANGELOG.md

@@ -18,6 +18,9 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
 - The dialog for [adding an entry using reference text](https://docs.jabref.org/collect/newentryfromplaintext) is now filled with the clipboard contents as default. [#11565](https://github.com/JabRef/jabref/pull/11565)
 - Added minimal support for [biblatex data annotation](https://mirrors.ctan.org/macros/latex/contrib/biblatex/doc/biblatex.pdf#subsection.3.7) fields in `.layout` files. [#11505](https://github.com/JabRef/jabref/issues/11505)
 - Added saving of selected options in the [Lookup -> Search for unlinked local files dialog](https://docs.jabref.org/collect/findunlinkedfiles#link-the-pdfs-to-your-bib-library). [#11439](https://github.com/JabRef/jabref/issues/11439)
+- We added a toggle button to invert the selected groups. [#9073](https://github.com/JabRef/jabref/issues/9073)
+- We reintroduced the floating search in the main table. [#4237](https://github.com/JabRef/jabref/issues/4237)
+- We fixed an issue where the selection of an entry in the table lost after searching for a group. [#3176](https://github.com/JabRef/jabref/issues/3176)
 
 ### Changed
 

build.gradle

@@ -89,7 +89,10 @@ application {
         '--add-exports=javafx.controls/com.sun.javafx.scene.control=org.jabref',
         '--add-opens=javafx.graphics/javafx.scene=org.jabref',
         '--add-opens=javafx.controls/javafx.scene.control=org.jabref',
-        '--add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref'
+        '--add-opens=javafx.controls/com.sun.javafx.scene.control=org.jabref',
+
+        '--add-opens=javafx.base/javafx.collections=org.jabref',
+        '--add-opens=javafx.base/javafx.collections.transformation=org.jabref'
     ]
 }
 
@@ -495,7 +498,10 @@ run {
                 'org.controlsfx.controls/org.controlsfx.control.textfield' : 'org.jabref',
 
                 'javafx.controls/javafx.scene.control.skin' : 'org.controlsfx.controls',
-                'javafx.graphics/javafx.scene' : 'org.controlsfx.controls'
+                'javafx.graphics/javafx.scene' : 'org.controlsfx.controls',
+
+                'javafx.base/javafx.collections' : 'org.jabref',
+                'javafx.base/javafx.collections.transformation' : 'org.jabref'
         ]
 
         addModules = [

src/main/java/org/jabref/gui/Base.css

@@ -648,6 +648,22 @@ TextFlow > .tooltip-text-monospaced {
     -fx-padding: 0 .5 0 .5;
 }
 
+.table-row-cell:matching-search-and-groups {
+    -fx-background-color: white;
+}
+
+.table-row-cell:matching-search-not-groups {
+    -fx-background-color: rgba(180, 180, 180, 0.86);
+}
+
+.table-row-cell:matching-groups-not-search {
+    -fx-background-color: rgba(140, 140, 140, 0.86);
+}
+
+.table-row-cell:not-matching-search-and-groups {
+    -fx-opacity: 60%;
+}
+
 .table-row-cell:hover,
 .tree-table-row-cell:hover {
     -fx-background-color: -jr-hover;

src/main/java/org/jabref/gui/LibraryTab.java

@@ -16,7 +16,11 @@
 import javafx.animation.PauseTransition;
 import javafx.application.Platform;
 import javafx.beans.property.BooleanProperty;
+import javafx.beans.property.IntegerProperty;
+import javafx.beans.property.ListProperty;
 import javafx.beans.property.SimpleBooleanProperty;
+import javafx.beans.property.SimpleIntegerProperty;
+import javafx.beans.property.SimpleListProperty;
 import javafx.beans.value.ObservableBooleanValue;
 import javafx.collections.ListChangeListener;
 import javafx.event.Event;
@@ -58,6 +62,7 @@
 import org.jabref.gui.undo.UndoableInsertEntries;
 import org.jabref.gui.undo.UndoableRemoveEntries;
 import org.jabref.gui.util.BackgroundTask;
+import org.jabref.gui.util.OptionalObjectProperty;
 import org.jabref.gui.util.TaskExecutor;
 import org.jabref.gui.util.UiTaskExecutor;
 import org.jabref.logic.citationstyle.CitationStyleCache;
@@ -88,6 +93,7 @@
 import org.jabref.model.entry.field.Field;
 import org.jabref.model.entry.field.FieldFactory;
 import org.jabref.model.entry.field.StandardField;
+import org.jabref.model.groups.GroupTreeNode;
 import org.jabref.model.util.DirectoryMonitor;
 import org.jabref.model.util.DirectoryMonitorManager;
 import org.jabref.model.util.FileUpdateMonitor;
@@ -149,8 +155,9 @@ private enum PanelMode { MAIN_TABLE, MAIN_TABLE_AND_ENTRY_EDITOR }
     @SuppressWarnings({"FieldCanBeLocal"})
     private Subscription dividerPositionSubscription;
 
-    // the query the user searches when this BasePanel is active
-    private Optional<SearchQuery> currentSearchQuery = Optional.empty();
+    private ListProperty<GroupTreeNode> selectedGroupsProperty;
+    private final OptionalObjectProperty<SearchQuery> searchQueryProperty = OptionalObjectProperty.empty();
+    private final IntegerProperty resultSize = new SimpleIntegerProperty(0);
 
     private Optional<DatabaseChangeMonitor> changeMonitor = Optional.empty();
 
@@ -162,15 +169,15 @@ private enum PanelMode { MAIN_TABLE, MAIN_TABLE_AND_ENTRY_EDITOR }
     private final DirectoryMonitorManager directoryMonitorManager;
 
     private LibraryTab(BibDatabaseContext bibDatabaseContext,
-                      LibraryTabContainer tabContainer,
-                      DialogService dialogService,
-                      PreferencesService preferencesService,
-                      StateManager stateManager,
-                      FileUpdateMonitor fileUpdateMonitor,
-                      BibEntryTypesManager entryTypesManager,
-                      CountingUndoManager undoManager,
-                      ClipBoardManager clipBoardManager,
-                      TaskExecutor taskExecutor) {
+                       LibraryTabContainer tabContainer,
+                       DialogService dialogService,
+                       PreferencesService preferencesService,
+                       StateManager stateManager,
+                       FileUpdateMonitor fileUpdateMonitor,
+                       BibEntryTypesManager entryTypesManager,
+                       CountingUndoManager undoManager,
+                       ClipBoardManager clipBoardManager,
+                       TaskExecutor taskExecutor) {
         this.tabContainer = Objects.requireNonNull(tabContainer);
         this.bibDatabaseContext = Objects.requireNonNull(bibDatabaseContext);
         this.undoManager = undoManager;
@@ -187,7 +194,8 @@ private LibraryTab(BibDatabaseContext bibDatabaseContext,
         bibDatabaseContext.getDatabase().registerListener(this);
         bibDatabaseContext.getMetaData().registerListener(this);
 
-        this.tableModel = new MainTableDataModel(getBibDatabaseContext(), preferencesService, stateManager);
+        this.selectedGroupsProperty = new SimpleListProperty<>(stateManager.getSelectedGroups(bibDatabaseContext));
+        this.tableModel = new MainTableDataModel(getBibDatabaseContext(), preferencesService, taskExecutor, selectedGroupsProperty(), searchQueryProperty(), resultSizeProperty());
 
         citationStyleCache = new CitationStyleCache(bibDatabaseContext);
         annotationCache = new FileAnnotationCache(bibDatabaseContext, preferencesService.getFilePreferences());
@@ -318,7 +326,10 @@ private void setDatabaseContext(BibDatabaseContext bibDatabaseContext) {
         bibDatabaseContext.getDatabase().registerListener(this);
         bibDatabaseContext.getMetaData().registerListener(this);
 
-        this.tableModel = new MainTableDataModel(getBibDatabaseContext(), preferencesService, stateManager);
+        this.tableModel.unbind();
+        this.selectedGroupsProperty = new SimpleListProperty<>(stateManager.getSelectedGroups(bibDatabaseContext));
+        this.tableModel = new MainTableDataModel(getBibDatabaseContext(), preferencesService, taskExecutor, selectedGroupsProperty(), searchQueryProperty(), resultSizeProperty());
+
         citationStyleCache = new CitationStyleCache(bibDatabaseContext);
         annotationCache = new FileAnnotationCache(bibDatabaseContext, preferencesService.getFilePreferences());
 
@@ -875,6 +886,9 @@ private void onClosed(Event event) {
             LOGGER.error("Problem when shutting down backup manager", e);
         }
 
+        if (tableModel != null) {
+            tableModel.unbind();
+        }
         // clean up the groups map
         stateManager.clearSelectedGroups(bibDatabaseContext);
     }
@@ -916,19 +930,16 @@ public MainTable getMainTable() {
         return mainTable;
     }
 
-    public Optional<SearchQuery> getCurrentSearchQuery() {
-        return currentSearchQuery;
+    public ListProperty<GroupTreeNode> selectedGroupsProperty() {
+        return selectedGroupsProperty;
     }
 
-    /**
-     * Set the query the user currently searches while this basepanel is active
-     */
-    public void setCurrentSearchQuery(Optional<SearchQuery> currentSearchQuery) {
-        this.currentSearchQuery = currentSearchQuery;
+    public OptionalObjectProperty<SearchQuery> searchQueryProperty() {
+        return searchQueryProperty;
     }
 
-    public CitationStyleCache getCitationStyleCache() {
-        return citationStyleCache;
+    public IntegerProperty resultSizeProperty() {
+        return resultSize;
     }
 
     public FileAnnotationCache getAnnotationCache() {

src/main/java/org/jabref/gui/StateManager.java

@@ -6,11 +6,8 @@
 import java.util.Optional;
 
 import javafx.beans.Observable;
-import javafx.beans.binding.Bindings;
 import javafx.beans.property.IntegerProperty;
 import javafx.beans.property.ObjectProperty;
-import javafx.beans.property.ReadOnlyListProperty;
-import javafx.beans.property.ReadOnlyListWrapper;
 import javafx.beans.property.SimpleIntegerProperty;
 import javafx.beans.property.SimpleObjectProperty;
 import javafx.collections.FXCollections;
@@ -22,6 +19,7 @@
 import javafx.util.Pair;
 
 import org.jabref.gui.edit.automaticfiededitor.LastAutomaticFieldEditorEdit;
+import org.jabref.gui.search.SearchType;
 import org.jabref.gui.sidepane.SidePaneType;
 import org.jabref.gui.util.BackgroundTask;
 import org.jabref.gui.util.CustomLocalDragboard;
@@ -56,29 +54,22 @@ public class StateManager {
     private final ObservableList<BibDatabaseContext> openDatabases = FXCollections.observableArrayList();
     private final OptionalObjectProperty<BibDatabaseContext> activeDatabase = OptionalObjectProperty.empty();
     private final OptionalObjectProperty<LibraryTab> activeTab = OptionalObjectProperty.empty();
-    private final ReadOnlyListWrapper<GroupTreeNode> activeGroups = new ReadOnlyListWrapper<>(FXCollections.observableArrayList());
     private final ObservableList<BibEntry> selectedEntries = FXCollections.observableArrayList();
     private final ObservableMap<String, ObservableList<GroupTreeNode>> selectedGroups = FXCollections.observableHashMap();
     private final OptionalObjectProperty<SearchQuery> activeSearchQuery = OptionalObjectProperty.empty();
     private final OptionalObjectProperty<SearchQuery> activeGlobalSearchQuery = OptionalObjectProperty.empty();
+    private final IntegerProperty searchResultSize = new SimpleIntegerProperty(0);
     private final IntegerProperty globalSearchResultSize = new SimpleIntegerProperty(0);
-    private final ObservableMap<String, IntegerProperty> searchResultMap = FXCollections.observableHashMap();
     private final OptionalObjectProperty<Node> focusOwner = OptionalObjectProperty.empty();
     private final ObservableList<Pair<BackgroundTask<?>, Task<?>>> backgroundTasks = FXCollections.observableArrayList(task -> new Observable[] {task.getValue().progressProperty(), task.getValue().runningProperty()});
     private final EasyBinding<Boolean> anyTaskRunning = EasyBind.reduce(backgroundTasks, tasks -> tasks.map(Pair::getValue).anyMatch(Task::isRunning));
     private final EasyBinding<Boolean> anyTasksThatWillNotBeRecoveredRunning = EasyBind.reduce(backgroundTasks, tasks -> tasks.anyMatch(task -> !task.getKey().willBeRecoveredAutomatically() && task.getValue().isRunning()));
     private final EasyBinding<Double> tasksProgress = EasyBind.reduce(backgroundTasks, tasks -> tasks.map(Pair::getValue).filter(Task::isRunning).mapToDouble(Task::getProgress).average().orElse(1));
     private final ObservableMap<String, DialogWindowState> dialogWindowStates = FXCollections.observableHashMap();
     private final ObservableList<SidePaneType> visibleSidePanes = FXCollections.observableArrayList();
-
     private final ObjectProperty<LastAutomaticFieldEditorEdit> lastAutomaticFieldEditorEdit = new SimpleObjectProperty<>();
-
     private final ObservableList<String> searchHistory = FXCollections.observableArrayList();
 
-    public StateManager() {
-        activeGroups.bind(Bindings.valueAt(selectedGroups, activeDatabase.orElseOpt(null).map(BibDatabaseContext::getUid)));
-    }
-
     public ObservableList<SidePaneType> getVisibleSidePaneComponents() {
         return visibleSidePanes;
     }
@@ -99,36 +90,12 @@ public OptionalObjectProperty<LibraryTab> activeTabProperty() {
         return activeTab;
     }
 
-    public OptionalObjectProperty<SearchQuery> activeSearchQueryProperty() {
-        return activeSearchQuery;
-    }
-
-    public void setActiveSearchResultSize(BibDatabaseContext database, IntegerProperty resultSize) {
-        searchResultMap.put(database.getUid(), resultSize);
-    }
-
-    public IntegerProperty getSearchResultSize() {
-        return searchResultMap.getOrDefault(activeDatabase.getValue().orElse(new BibDatabaseContext()).getUid(), new SimpleIntegerProperty(0));
-    }
-
-    public OptionalObjectProperty<SearchQuery> activeGlobalSearchQueryProperty() {
-        return activeGlobalSearchQuery;
-    }
-
-    public IntegerProperty getGlobalSearchResultSize() {
-        return globalSearchResultSize;
+    public OptionalObjectProperty<SearchQuery> activeSearchQuery(SearchType type) {
+        return type == SearchType.NORMAL_SEARCH ? activeSearchQuery : activeGlobalSearchQuery;
     }
 
-    public IntegerProperty getSearchResultSize(OptionalObjectProperty<SearchQuery> searchQueryProperty) {
-        if (searchQueryProperty.equals(activeSearchQuery)) {
-            return getSearchResultSize();
-        } else {
-            return getGlobalSearchResultSize();
-        }
-    }
-
-    public ReadOnlyListProperty<GroupTreeNode> activeGroupProperty() {
-        return activeGroups.getReadOnlyProperty();
+    public IntegerProperty searchResultSize(SearchType type) {
+        return type == SearchType.NORMAL_SEARCH ? searchResultSize : globalSearchResultSize;
     }
 
     public ObservableList<BibEntry> getSelectedEntries() {
@@ -139,18 +106,17 @@ public void setSelectedEntries(List<BibEntry> newSelectedEntries) {
         selectedEntries.setAll(newSelectedEntries);
     }
 
-    public void setSelectedGroups(BibDatabaseContext database, List<GroupTreeNode> newSelectedGroups) {
+    public void setSelectedGroups(BibDatabaseContext context, List<GroupTreeNode> newSelectedGroups) {
         Objects.requireNonNull(newSelectedGroups);
-        selectedGroups.put(database.getUid(), FXCollections.observableArrayList(newSelectedGroups));
+        selectedGroups.computeIfAbsent(context.getUid(), k -> FXCollections.observableArrayList()).setAll(newSelectedGroups);
     }
 
     public ObservableList<GroupTreeNode> getSelectedGroups(BibDatabaseContext context) {
-        ObservableList<GroupTreeNode> selectedGroupsForDatabase = selectedGroups.get(context.getUid());
-        return selectedGroupsForDatabase != null ? selectedGroupsForDatabase : FXCollections.observableArrayList();
+        return selectedGroups.computeIfAbsent(context.getUid(), k -> FXCollections.observableArrayList());
     }
 
-    public void clearSelectedGroups(BibDatabaseContext database) {
-        selectedGroups.remove(database.getUid());
+    public void clearSelectedGroups(BibDatabaseContext context) {
+        selectedGroups.computeIfAbsent(context.getUid(), k -> FXCollections.observableArrayList()).clear();
     }
 
     public Optional<BibDatabaseContext> getActiveDatabase() {
@@ -166,18 +132,6 @@ public void setActiveDatabase(BibDatabaseContext database) {
         }
     }
 
-    public void clearSearchQuery() {
-        activeSearchQuery.setValue(Optional.empty());
-    }
-
-    public void setSearchQuery(OptionalObjectProperty<SearchQuery> searchQueryProperty, SearchQuery query) {
-        searchQueryProperty.setValue(Optional.of(query));
-    }
-
-    public void clearSearchQuery(OptionalObjectProperty<SearchQuery> searchQueryProperty) {
-        searchQueryProperty.setValue(Optional.empty());
-    }
-
     public OptionalObjectProperty<Node> focusOwnerProperty() {
         return focusOwner;
     }
@@ -219,10 +173,6 @@ public ObjectProperty<LastAutomaticFieldEditorEdit> lastAutomaticFieldEditorEdit
         return lastAutomaticFieldEditorEdit;
     }
 
-    public LastAutomaticFieldEditorEdit getLastAutomaticFieldEditorEdit() {
-        return lastAutomaticFieldEditorEditProperty().get();
-    }
-
     public void setLastAutomaticFieldEditorEdit(LastAutomaticFieldEditorEdit automaticFieldEditorEdit) {
         lastAutomaticFieldEditorEditProperty().set(automaticFieldEditorEdit);
     }

src/main/java/org/jabref/gui/entryeditor/EntryEditor.java

@@ -301,12 +301,12 @@ private List<EntryEditorTab> createTabs() {
                 preferencesService.getImportFormatPreferences(),
                 fileMonitor,
                 dialogService,
-                stateManager,
                 bibEntryTypesManager,
-                keyBindingRepository);
+                keyBindingRepository,
+                libraryTab.searchQueryProperty());
         tabs.add(sourceTab);
         tabs.add(new LatexCitationsTab(databaseContext, preferencesService, dialogService, directoryMonitorManager));
-        tabs.add(new FulltextSearchResultsTab(stateManager, preferencesService, dialogService, taskExecutor));
+        tabs.add(new FulltextSearchResultsTab(stateManager, preferencesService, dialogService, taskExecutor, libraryTab.searchQueryProperty()));
 
         return tabs;
     }