Bug fix in py-scipy for versions 1.8.0 to 1.14.0 (small_dynamic_array.h: error: reference to non-static member function must be called) spack #47620 #1562
Workflow file for this run
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| name: unit tests | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - releases/** | |
| - spack-stack-dev | |
| - release/** | |
| pull_request: | |
| branches: | |
| - develop | |
| - releases/** | |
| - spack-stack-dev | |
| - release/** | |
| workflow_dispatch: | |
| workflow_call: | |
| concurrency: | |
| group: unit_tests-${{github.ref}}-${{github.event.pull_request.number || github.run_number}} | |
| cancel-in-progress: true | |
| jobs: | |
| # Run unit tests with different configurations on linux | |
| ubuntu: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12'] | |
| on_develop: | |
| - ${{ github.ref == 'refs/heads/develop' }} | |
| include: | |
| - python-version: '3.6' | |
| os: ubuntu-20.04 | |
| on_develop: ${{ github.ref == 'refs/heads/develop' }} | |
| exclude: | |
| - python-version: '3.7' | |
| os: ubuntu-latest | |
| on_develop: false | |
| - python-version: '3.8' | |
| os: ubuntu-latest | |
| on_develop: false | |
| - python-version: '3.9' | |
| os: ubuntu-latest | |
| on_develop: false | |
| - python-version: '3.10' | |
| os: ubuntu-latest | |
| on_develop: false | |
| - python-version: '3.11' | |
| os: ubuntu-latest | |
| on_develop: false | |
| steps: | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install System packages | |
| run: | | |
| sudo apt-get -y update | |
| # Needed for unit tests | |
| sudo apt-get -y install \ | |
| coreutils cvs gfortran graphviz gnupg2 mercurial ninja-build \ | |
| cmake bison libbison-dev kcov | |
| - name: remove-extension | |
| run: | | |
| source share/spack/setup-env.sh | |
| spack config --scope=defaults rm "config:extensions" | |
| - name: Install Python packages | |
| run: | | |
| pip install --upgrade pip setuptools pytest pytest-xdist pytest-cov | |
| pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click" "black" | |
| - name: Setup git configuration | |
| run: | | |
| # Need this for the git tests to succeed. | |
| git --version | |
| . .github/workflows/bin/setup_git.sh | |
| - name: Bootstrap clingo | |
| if: ${{ matrix.concretizer == 'clingo' }} | |
| env: | |
| SPACK_PYTHON: python | |
| run: | | |
| . share/spack/setup-env.sh | |
| spack bootstrap disable spack-install | |
| spack bootstrap now | |
| spack -v solve zlib | |
| - name: Run unit tests | |
| env: | |
| SPACK_PYTHON: python | |
| SPACK_TEST_PARALLEL: 2 | |
| COVERAGE: true | |
| COVERAGE_FILE: coverage/.coverage-${{ matrix.os }}-python${{ matrix.python-version }} | |
| UNIT_TEST_COVERAGE: ${{ matrix.python-version == '3.11' }} | |
| run: | | |
| share/spack/qa/run-unit-tests | |
| - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 | |
| with: | |
| name: coverage-${{ matrix.os }}-python${{ matrix.python-version }} | |
| path: coverage | |
| include-hidden-files: true | |
| # Test shell integration | |
| shell: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b | |
| with: | |
| python-version: '3.11' | |
| - name: Install System packages | |
| run: | | |
| sudo apt-get -y update | |
| # Needed for shell tests | |
| sudo apt-get install -y coreutils kcov csh zsh tcsh fish dash bash | |
| - name: Install Python packages | |
| run: | | |
| pip install --upgrade pip setuptools pytest coverage[toml] pytest-xdist | |
| - name: Setup git configuration | |
| run: | | |
| # Need this for the git tests to succeed. | |
| git --version | |
| . .github/workflows/bin/setup_git.sh | |
| - name: remove-extension | |
| run: | | |
| source share/spack/setup-env.sh | |
| spack config --scope=defaults rm "config:extensions" | |
| - name: Run shell tests | |
| env: | |
| COVERAGE: true | |
| run: | | |
| share/spack/qa/run-shell-tests | |
| - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 | |
| with: | |
| name: coverage-shell | |
| path: coverage | |
| include-hidden-files: true | |
| # Test RHEL8 UBI with platform Python. This job is run | |
| # only on PRs modifying core Spack | |
| rhel8-platform-python: | |
| runs-on: ubuntu-latest | |
| container: registry.access.redhat.com/ubi8/ubi | |
| steps: | |
| - name: Install dependencies | |
| run: | | |
| dnf install -y \ | |
| bzip2 curl file gcc-c++ gcc gcc-gfortran git gnupg2 gzip \ | |
| make patch tcl unzip which xz | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| - name: Setup repo and non-root user | |
| run: | | |
| git --version | |
| git config --global --add safe.directory /__w/spack/spack | |
| git fetch --unshallow | |
| . .github/workflows/bin/setup_git.sh | |
| useradd spack-test | |
| chown -R spack-test . | |
| - name: remove-extension | |
| shell: runuser -u spack-test -- bash {0} | |
| run: | | |
| source share/spack/setup-env.sh | |
| spack config --scope=defaults rm "config:extensions" | |
| - name: Run unit tests | |
| shell: runuser -u spack-test -- bash {0} | |
| run: | | |
| source share/spack/setup-env.sh | |
| spack -d bootstrap now --dev | |
| spack unit-test -k 'not cvs and not svn and not hg' -x --verbose | |
| # Test for the clingo based solver (using clingo-cffi) | |
| clingo-cffi: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b | |
| with: | |
| python-version: '3.13' | |
| - name: Install System packages | |
| run: | | |
| sudo apt-get -y update | |
| sudo apt-get -y install coreutils gfortran graphviz gnupg2 | |
| - name: Install Python packages | |
| run: | | |
| pip install --upgrade pip setuptools pytest coverage[toml] pytest-cov clingo | |
| pip install --upgrade flake8 "isort>=4.3.5" "mypy>=0.900" "click" "black" | |
| - name: remove-extension | |
| run: | | |
| source share/spack/setup-env.sh | |
| spack config --scope=defaults rm "config:extensions" | |
| - name: Run unit tests (full suite with coverage) | |
| env: | |
| COVERAGE: true | |
| COVERAGE_FILE: coverage/.coverage-clingo-cffi | |
| run: | | |
| . share/spack/setup-env.sh | |
| spack bootstrap disable spack-install | |
| spack bootstrap disable github-actions-v0.5 | |
| spack bootstrap disable github-actions-v0.6 | |
| spack bootstrap status | |
| spack solve zlib | |
| spack unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml lib/spack/spack/test/concretize.py | |
| - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 | |
| with: | |
| name: coverage-clingo-cffi | |
| path: coverage | |
| include-hidden-files: true | |
| # Run unit tests on MacOS | |
| macos: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [macos-13, macos-14] | |
| python-version: ["3.11"] | |
| steps: | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python packages | |
| run: | | |
| pip install --upgrade pip setuptools | |
| pip install --upgrade pytest coverage[toml] pytest-xdist pytest-cov | |
| - name: Setup Homebrew packages | |
| run: | | |
| brew install dash fish gcc gnupg kcov | |
| - name: remove-extension | |
| run: | | |
| source share/spack/setup-env.sh | |
| spack config --scope=defaults rm "config:extensions" | |
| - name: Run unit tests | |
| env: | |
| SPACK_TEST_PARALLEL: 4 | |
| COVERAGE_FILE: coverage/.coverage-${{ matrix.os }}-python${{ matrix.python-version }} | |
| run: | | |
| git --version | |
| . .github/workflows/bin/setup_git.sh | |
| . share/spack/setup-env.sh | |
| $(which spack) bootstrap disable spack-install | |
| $(which spack) solve zlib | |
| common_args=(--dist loadfile --tx '4*popen//python=./bin/spack-tmpconfig python -u ./bin/spack python' -x) | |
| $(which spack) unit-test --verbose --cov --cov-config=pyproject.toml --cov-report=xml:coverage.xml "${common_args[@]}" | |
| - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 | |
| with: | |
| name: coverage-${{ matrix.os }}-python${{ matrix.python-version }} | |
| path: coverage | |
| include-hidden-files: true | |
| # Run unit tests on Windows | |
| windows: | |
| # DH* | |
| # Can't run this on other repos than spack/spack | |
| if: github.repository == 'spack/spack' | |
| # *DH | |
| defaults: | |
| run: | |
| shell: | |
| powershell Invoke-Expression -Command "./share/spack/qa/windows_test_setup.ps1"; {0} | |
| runs-on: windows-latest | |
| steps: | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b | |
| with: | |
| python-version: 3.9 | |
| - name: Install Python packages | |
| run: | | |
| python -m pip install --upgrade pip pywin32 setuptools pytest-cov clingo | |
| - name: Create local develop | |
| run: | | |
| ./.github/workflows/bin/setup_git.ps1 | |
| - name: remove-extension | |
| run: | | |
| source share/spack/setup-env.sh | |
| spack config --scope=defaults rm "config:extensions" | |
| - name: Unit Test | |
| env: | |
| COVERAGE_FILE: coverage/.coverage-windows | |
| run: | | |
| spack unit-test -x --verbose --cov --cov-config=pyproject.toml | |
| ./share/spack/qa/validate_last_exit.ps1 | |
| - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 | |
| with: | |
| name: coverage-windows | |
| path: coverage | |
| include-hidden-files: true |