Add simple ITK-Wasm DICOM SEG example #714
Workflow file for this run
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| name: Notebook tests | |
| on: [push, pull_request] | |
| jobs: | |
| run: | |
| runs-on: ubuntu-latest | |
| name: Test notebooks with nbmake | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/setup-java@v3 | |
| with: | |
| java-version: '8' | |
| distribution: 'zulu' | |
| - name: Install test dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install -e ".[test,all]" | |
| python3 -m pip install pyimagej urllib3 | |
| python3 -c "import imagej; ij = imagej.init('2.5.0'); print(ij.getVersion())" | |
| python3 -m pip install "itk>=5.3.0" | |
| - name: Test notebooks | |
| if: ${{ matrix.python-version != '3.8' }} | |
| run: | | |
| pytest --nbmake --nbmake-timeout=3000 examples/EnvironmentCheck.ipynb examples/Hello3DWorld.ipynb examples/NumPyArrayPointSet.ipynb examples/integrations/**/*.ipynb | |
| - name: Test notebooks | |
| if: ${{ matrix.python-version == '3.8' }} | |
| run: | | |
| pytest --nbmake --nbmake-timeout=3000 examples/Hello3DWorld.ipynb examples/NumPyArrayPointSet.ipynb examples/integrations/**/*.ipynb |