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This repository has been archived by the owner on Jul 17, 2023. It is now read-only.

Issues: Illumina/manta

128 Open 174 Closed
128 Open 174 Closed
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Issues list

Installation issue (possible bug - library_version_type/ libdeflate should be from source)
#313 opened Jul 13, 2023 by hongsilv
Why is START and END the same in the diploidSV.vcf.gz?
#312 opened Jul 7, 2023 by robertzeibich
Failure to call well-known fusions on WES samples
#311 opened May 24, 2023 by maximus3219
What is the benefit of the stats folder? Are some structural variants more relevant than others in the candidateSV.vcf file??
#310 opened Apr 25, 2023 by robertzeibich
Manta currently handles paired-end (FR) reads only.
#309 opened Apr 13, 2023 by hanqin580230
2
--exome: command not found & bin/configManta.py: No such file or directory
#307 opened Mar 25, 2023 by yr542
Get STRAND INFO in the vcf output
#306 opened Mar 24, 2023 by Sreelekshmi-291
Problem finding .bed.gz.tbi index file with --callRegions
#305 opened Mar 6, 2023 by lunalvan
merge the two lines translocation(BND) records into one line
#303 opened Dec 3, 2022 by Qijie0615
Population-scale SV merging does not produce 0/0 genotypes
#302 opened Nov 29, 2022 by DomManou
No reads passing filters for dragmap-aligned bams
#299 opened Oct 18, 2022 by Rohan-Abraham
Error when running debugSingleSV
#298 opened Oct 14, 2022 by wongwsw
Depth based exclusion process question
#297 opened Oct 12, 2022 by hayeon-pak
Errors in MantaDemoAnalysis.py
#296 opened Sep 29, 2022 by HeejunJang
Know SV can not detected by manta
#294 opened Sep 14, 2022 by iskysinger
3
isEmail function in run script makes Manta hang
#293 opened Sep 7, 2022 by holtgrewe
denovo_scoring.py extension - failure to read sample IDs in VCF
#292 opened Sep 5, 2022 by McClatcheyM
4
[Question] How does Manta handle PCR duplicates?
#291 opened Aug 31, 2022 by tbaker18
1
[Question]: Is ARM64 architecture supported ?
#289 opened Jul 18, 2022 by julien-faye
1
Versioning on conda
#287 opened Jun 15, 2022 by dmaziec
1
The orientation of structural variations
#286 opened May 26, 2022 by cauliyang
Split and spanning reads
#285 opened May 25, 2022 by dmaziec
1
Fail to open existing file
#283 opened Mar 14, 2022 by elcortegano
2
SV calling on chrMT
#281 opened Jan 7, 2022 by marc-sturm
Does Manta support 10x linked-read sorted bam files?
#280 opened Dec 6, 2021 by goldpm1
3
ProTip! What’s not been updated in a month: updated:<2024-10-19.