Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Stats updates #94

Merged
merged 11 commits into from
Sep 2, 2020
Merged

Stats updates #94

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
11 commits
Select commit Hold shift + click to select a range
29acfd1
Update published stats for prod85
sbesson Aug 28, 2020
043e366
Update set numbers for idr0048 and idr0085
sbesson Aug 28, 2020
7d992ef
Update stats for prod84
sbesson Aug 28, 2020
ac09842
Update stats for prod82
sbesson Aug 28, 2020
5ccd55c
Update raw numbers for idr0043 up to prod86
sbesson Aug 29, 2020
a81c511
Update stats for prod81
sbesson Aug 29, 2020
4c90f27
Update stats for prod80
sbesson Aug 29, 2020
766b488
Update stats for prod73
sbesson Aug 29, 2020
b02b633
Update stats for prod72
sbesson Aug 29, 2020
214a42f
Recompute release stats for prod73 -> prod85
sbesson Aug 31, 2020
8a74332
Add release stats for prod86
sbesson Aug 31, 2020
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
15 changes: 8 additions & 7 deletions _data/releases.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -32,10 +32,11 @@ Date Data release Code version Sets Wells Experiments Images Planes Size (TB) Fi
2019-09-17 prod70 0.7.0 10194 1140531 1113284 7677551 58031858 127.66 19.30 356
2019-11-06 prod71 0.7.1 11318 1188147 1161900 8356200 60071981 142.36 20.36 393
2019-12-10 prod72 0.7.2 11534 1188147 1161986 8370659 61394055 145.97 21.79 398
2020-01-16 prod73 0.7.3 12544 1188147 1162996 8862811 62870471 159 22.28 423
2020-03-03 prod80 0.8.0 12569 1195544 1163021 9083954 63754850 169.17 23.18 431
2020-04-27 prod81 0.8.1 12579 1195994 1163031 9084406 63757664 169.25 23.18 366
2020-05-19 prod82 0.8.2 12617 1210586 1177623 9098998 63786848 169.48 23.22 367
2020-06-15 prod83 0.8.3 12617 1210586 1177623 9098998 63786848 169.48 23.22 367
2020-06-30 prod84 0.8.4 12935 1210586 1178081 9104040 64886054 180.8749 23.23 358
2020-07-22 prod85 0.8.5 13027 1210586 1178173 9106609 65211327 181.1312 23.24 359
2020-01-16 prod73 0.7.3 12544 1188147 8862811 62872383 158.30338343134298 21.780547 423
2020-03-03 prod80 0.8.0 12569 1195544 9083954 63756762 158.91306092503 22.181109 431
2020-04-27 prod81 0.8.1 12579 1196615 9084406 63865664 159.04156184442 22.182035 366
2020-05-19 prod82 0.8.2 12617 1211207 9098998 63894848 159.28699533981302 22.225895 367
2020-06-15 prod83 0.8.3 12617 1211207 9098998 63894848 159.28699533981302 22.225895 367
2020-06-30 prod84 0.8.4 12935 1211207 9104113 64994054 166.051140219111 22.239085 358
2020-07-22 prod85 0.8.5 13027 1211207 9106682 65319327 166.32930891414 22.2468 359
2020-08-12 prod86 0.8.6 13031 1211207 9106691 65339012 166.57472994900098 22.246952 385
56 changes: 28 additions & 28 deletions _data/studies.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,7 @@ idr0038-held-kidneylightsheet experimentC prod44 353 3 0 3 2 0 12 236872 1.70676
idr0040-aymoz-singlecell experimentA prod47 401 76 0 76 0 780 86116 0.7258287638 725828763846 88205 8.228884574 2048 x 2048 x 1 x 5 x 21.5
idr0041-cai-mitoticatlas experimentA prod47 404 276 0 276 0 60480 3749760 0.5014639821 501463982132 181442 2.763770142 256 x 256 x 31 x 2 x 1
idr0042-nirschl-wsideeplearning experimentA prod47 402 2 0 2 0 2299 6897 0.00037565707 375657070 6898 0.05445883879 250 x 250 x 1 x 3 x 1
idr0043-uhlen-humanproteinatlas experimentA prod52 501 7000 0 7000 0 3432371 10297113 93 102254581383168 4432507 27.62532601 3000 x 3000 x 1 x 3 x 1
idr0043-uhlen-humanproteinatlas experimentA prod52 501 7000 0 7000 0 3432371 10297113 92.622284676108 92622284676108 3433139 26.978891526415913 3000 x 3000 x 1 x 3 x 1
idr0044-mcdole-tardislightsheet experimentA prod60 502 4 0 4 0 16 1818463 0.6388373679 638837367871 7889 80.97824412 2128 x 1476 x 219 x 1 x 359
idr0045-reichmann-zygotespindle experimentA prod51 405 15 0 15 373 2163099 1.348954457 1348954457309 25317 53.28255549 487 x 487 x 71 x 2.5 x 40
idr0047-neuert-yeastmRNA experimentA prod62 503 10 0 5 0 1011 78668 0.6628229832 662822983214 8781 75.48376987 2048 x 2048 x 17.1 x 5.3 x 1
Expand All @@ -61,37 +61,37 @@ idr0052-walther-condensinmap experimentC prod66 754 6 0 6 0 171 8720 0.00053110
idr0051-fulton-tailbudlightsheet experimentA prod60 552 3 0 3 0 5 243029 0.01510907904 15109079040 627 24.09741474 429 x 463 x 357 x 1 x 122
idr0053-faas-virtualnanoscopy experimentA prod62 504 4 0 4 0 5 11 0.532245095 532245095014 17 31308.535 225078.4 x 113347.2 x 1 x 2.2 x 1
idr0054-segura-tonsilhyperion experimentA prod65 701 1 0 1 0 3 81 0.000200247605 200247605 91 2.200523132 2500 x 2500 x 1 x 27 x 1
idr0056-stojic-lncrnas screenA prod80 2301 10 3080 10 92400 369600 0.224090727 246390360251 166953 2.543032017 660 x 501 x 1 x 4 x 1
idr0056-stojic-lncrnas screenB prod80 2302 10 3837 10 115110 460440 0.275340955 302740581841 219100 2.508174072 659 x 493 x 1 x 4 x 1
idr0056-stojic-lncrnas screenC prod80 2303 2 480 2 13440 53760 0.032765878 36026463637 13929 2.55636258 667 x 499 x 1 x 4 x 1
idr0056-stojic-lncrnas screenA prod80 2301 10 3080 8 92400 369600 0.246390360251 246390360251 166953 1.4758067255515026 660 x 501 x 1 x 4 x 1
idr0056-stojic-lncrnas screenB prod80 2302 10 3837 9 115110 460440 0.302740581841 302740581841 219100 1.3817461517161114 660 x 494 x 1 x 4 x 1
idr0056-stojic-lncrnas screenC prod80 2303 2 480 0 13440 53760 0.036026463637 36026463637 13929 2.586435755402398 667 x 499 x 1 x 4 x 1
idr0061-wolf-spindlepositioning screenA prod68 2101 31 2976 2976 31 5952 1071360 8.444 9066895195262 1085415 7.96641383919385 2048 x 2048 x 1 x 1 x 180
idr0062-blin-nuclearsegmentation experimentA prod67 801 5 0 5 0 22 8222 0.02161802412 21618024122 94 229.97898 618.0 x 548.0 x 168.0 x 3 x 1
idr0064-goglia-erkdynamics screenA prod81 2351 9 450 9 9 450 900 0.05714168171 57141681707 450 126.9815149 512 x 512 x 1 x 2 x 121
idr0065-camsund-crispri experimentA prod72 901 13 0 13 0 1170 1125540 3.100002577 3100002577126 846486 3.662201829 2048 x 879 x 1 x 2 x 481
idr0065-camsund-crispri experimentB prod72 902 143 0 13 0 12870 64350 0.2325029055 232502905507 77520 2.999263487 2048 x 879 x 1 x 5 x 1
idr0064-goglia-erkdynamics screenA prod81 2351 9 1071 0 450 108900 0.057141681707 57141681707 919 62.17810849510337 512 x 512 x 1 x 2 x 121
idr0065-camsund-crispri experimentA prod72 901 13 0 0 1170 1125540 3.100002577126 3100002577126 846486 3.662201828649263 2048 x 879 x 1 x 2 x 481
idr0065-camsund-crispri experimentB prod72 902 143 0 0 12870 64350 0.232502905507 232502905507 77520 2.999263486932404 2048 x 879 x 1 x 5 x 1
idr0066-voigt-mesospim experimentA prod70 851 2 0 2 0 6 8222 0.03252215387 32522153872 18 1806.786326 2048 x 1668 x 646 x 1 x 1
idr0066-voigt-mesospim experimentB prod70 852 2 0 2 0 5 3878 0.0270802508 27080250795 15 1805.350053 5493 x 2188 x 748 x 1 x 1
idr0066-voigt-mesospim experimentC prod70 853 3 0 3 0 4 3739 0.03797700596 37977005959 12 3164.750497 2044 x 2130 x 1084 x 1 x 1
idr0066-voigt-mesospim experimentD prod70 854 1 0 1 0 2 2978 0.04118653215 41186532145 6 6864.422024 5025 x 6735 x 1489 x 1 x 1
idr0067-king-yeastmeiosis experimentA prod72 904 60 0 60 0 419 136360 0.2854708875 285470887482 1594 179.0908955 1224 x 1224 x 8 x 2 x 36
idr0067-king-yeastmeiosis experimentA prod72 904 60 0 0 419 136360 0.285470887482 285470887482 1594 179.0908955345044 1224 x 1224 x 8 x 2 x 36
idr0069-caldera-perturbome screenA prod71 2251 124 47616 47616 190464 571392 1.225666503 1225666502656 571912 2.143103314 1360 x 1024 x 1 x 3 x 1
idr0070-kerwin-hdbr experimentA prod84 1104 287 0 287 0 4554 13512 4.9 1.33536E+11 9219 14484878.44 8223 x 9270 x 1 x 3 x 1
idr0073-schaadt-immuneinfiltrates experimentA prod80 1002 193 0 3 193 579 0.02230089 24520087958 580 121.1615447 5578 x 5048 x 1 x 3 x 1
idr0075-cabirol-honeybee experimentA prod73 951 10 0 10 20 1932 0.0009225002 1014299685 81 48.3655779362 512 x 512 x 100 x 1 x 1
idr0077-valuchova-flowerlightsheet experimentA prod84 1101 9 0 149 0 76 1005278 6.3 6.49073E+12 1938 3194.0363755 1780 x 1780 x 99 x 4 x 32
idr0079-hartmann-lateralline experimentA prod84 1102 20 0 20 0 350 69499 0.17 1.22001E+11 1708 71429200.48 1623 x 809 x 141 x 1 x 1
idr0079-hartmann-lateralline experimentB prod84 1103 2 0 2 0 62 10917 0.0249 17873427660 312 57286627.12 1572 x 780 x 117 x 2 x 1
idr0081-georgi-adenovirus screenA prod82 2401 2 768 768 0 768 1536 0.01292449019 12924490193 2310 5.5950174 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus screenB prod82 2402 2 768 768 0 768 1536 0.01292449019 12924490193 2310 5.5950174 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus screenC prod82 2403 2 768 768 0 768 1536 0.01292449019 12924490193 2310 5.5950174 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus screenD prod82 2404 16 6144 6144 0 6144 12288 0.103400585 103400585023 18466 5.599511807 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus screenE prod82 2405 16 6144 6144 0 6144 12288 0.1032493044 103249304353 18464 5.591925062 2048 x 2048 x 1 x 2 x 1
idr0083-lamers-sarscov2 experimentA prod81 1051 1 0 1 0 2 2 0.07135923717 71359237166 2 35679.61858 111872 x 130304 x 1 x 1 x 1
idr0084-oudelaar-alphaglobin experimentA prod85 1151 6 0 6 0 493 55258 0.1079 1.15926E+11 1481 78275250.26 1024 x 1024 x 50 x 2 x 1
idr0086-miron-micrographs experimentA prod85 1158 25 0 25 0 574 55454 0.0271 29169557122 1723 16929516.61 512 x 512 x 50 x 2 x 1
idr0086-miron-micrographs experimentB prod85 1159 18 0 18 0 943 138555 0.0677 72865285123 2830 25747450.57 512 x 512 x 50 x 3 x 1
idr0086-miron-micrographs experimentC prod85 1160 3 0 3 0 92 14484 0.0071 7617483877 277 27499941.79 512 x 512 x 50 x 3 x 1
idr0086-miron-micrographs experimentD prod85 1161 2 0 2 0 11 10546 0.0076 4104873039 34 120731560 1121 x 775 x 500 x 1 x 1
idr0087-paci-nuclearimport experimentA prod85 1157 38 0 38 0 456 50976 0.0389 48485850230 1370 35391131.55 640 x 640 x 1 x 3 x 40
idr0048-abdeladim-chroms experimentA prod86 1201 2 0 0 2 4479 0.129647463006 129647463006 127 1020.8461654015748 11034 x 9271 x 747 x 3 x 1
idr0085-walsh-mfhrem experimentA prod86 1202 7 0 0 7 15206 0.115773571855 115773571855 25 4630.9428742 2076 x 1681 x 1160 x 2 x 1
idr0070-kerwin-hdbr experimentA prod84 1104 287 0 0 4554 13512 0.133538190509 133538190509 9232 14.464708677318024 8223 x 9270 x 1 x 3 x 1
idr0073-schaadt-immuneinfiltrates experimentA prod80 1002 3 0 0 193 579 0.024520087958 24520087958 580 42.276013720689654 7905 x 6994 x 1 x 3 x 1
idr0075-cabirol-honeybee experimentA prod73 951 10 0 0 20 1932 0.001014299685 1014299685 81 12.522218333333335 512 x 512 x 97 x 1 x 1
idr0077-valuchova-flowerlightsheet experimentA prod84 1101 9 0 0 149 1005278 6.490732186705 6490732186705 1938 3349.1910148116617 1780 x 1780 x 99 x 4 x 32
idr0079-hartmann-lateralline experimentA prod84 1102 20 0 0 350 69499 0.122001074424 122001074424 1708 71.4292004824356 1623 x 809 x 141 x 1 x 1
idr0079-hartmann-lateralline experimentB prod84 1103 2 0 0 62 10917 0.01787342766 17873427660 312 57.28662711538462 1572 x 780 x 117 x 2 x 1
idr0081-georgi-adenovirus screenA prod82 2401 2 768 2 768 1536 0.012925055458 12925055458 2310 5.595262103030303 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus screenB prod82 2402 2 768 2 768 1536 0.012925618753 12925618753 2310 5.595505953679654 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus screenC prod82 2403 2 768 2 768 1536 0.012908962639 12908962639 2310 5.588295514718615 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus screenD prod82 2404 16 6144 16 6144 12288 0.103411092154 103411092154 18466 5.600080805480342 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus screenE prod82 2405 16 6144 16 6144 12288 0.103262766389 103262766389 18464 5.592654158849654 2048 x 2048 x 1 x 2 x 1
idr0083-lamers-sarscov2 experimentA prod81 1051 1 0 0 2 2 0.071359237683 71359237683 7 10194.176811857144 111872 x 130304 x 1 x 1 x 1
idr0084-oudelaar-alphaglobin experimentA prod85 1151 6 0 0 493 55258 0.115925645638 115925645638 1481 78.27525026198514 1024 x 1024 x 56 x 2 x 1
idr0086-miron-micrographs experimentA prod85 1158 25 0 0 574 55454 0.029169557122 29169557122 1723 16.929516611723734 512 x 512 x 45 x 2 x 1
idr0086-miron-micrographs experimentB prod85 1159 18 0 0 943 138555 0.072865285123 72865285123 2830 25.747450573498234 512 x 512 x 49 x 3 x 1
idr0086-miron-micrographs experimentC prod85 1160 3 0 0 92 14484 0.007617483877 7617483877 277 27.499941794223826 512 x 512 x 52 x 3 x 1
idr0086-miron-micrographs experimentD prod85 1161 2 0 0 11 10546 0.004104873039 4104873039 34 120.73155997058824 1018 x 602 x 503 x 2 x 1
idr0087-paci-nuclearimport experimentA prod85 1157 38 0 0 456 50976 0.04848585023 48485850230 1370 35.391131554744526 640 x 640 x 1 x 3 x 37
idr0048-abdeladim-chroms experimentA prod86 1201 1 0 0 2 4479 0.129647463006 129647463006 127 1020.8461654015748 11034 x 9271 x 747 x 3 x 1
idr0085-walsh-mfhrem experimentA prod86 1202 3 0 0 7 15206 0.115773571855 115773571855 25 4630.9428742 2076 x 1681 x 1160 x 2 x 1
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I can see that these two lines were added at the end of the document, but should they not be rather inserted into the correct line to keep ascending order by the study number ?

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I don't think it is a requirement. My assumption is that this TSV file should extend as studies get released so the natural order will rather to have the Introduced column in ascending order.

Consumers of the TSV file like https://idr.openmicroscopy.org/about/studies.html should be able to do the filtering and sorting by their column of choice.