update plate layouts and ps converters

Gibbons-Lab · Nov 3, 2023 · a9868ef · a9868ef
1 parent f36c520
commit a9868ef
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/R/convert.R b/R/convert.R
@@ -124,7 +124,8 @@ reads_to_phyloseq <- function(
         counts,
         reformulate(feature_col, response = "sample_id"),
         value.var = "reads",
-        fill = 0
+        fill = 0,
+        fun.aggregate = sum
     )
     samps <- table$sample_id
     table <- as.matrix(table[, !"sample_id"])