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Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 337 80

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 272 107

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 115 3

  4. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 42 6

  5. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 33 4

  6. clamsa clamsa Public

    Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Python 9

Repositories

Showing 10 of 17 repositories
  • clamsa Public Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Gaius-Augustus/clamsa’s past year of commit activity
    Python 9 2 4 (1 issue needs help) 0 Updated Jul 4, 2024
  • tf_tcmc Public Forked from liemonade/tf_tcmc

    Tensorflow Implementation for calculating graphical probabilistical models with edge transitions modelled by Time-reversible Continuous-time Markov Chains (TCMC).

    Gaius-Augustus/tf_tcmc’s past year of commit activity
    Python 2 1 1 0 Updated Jul 4, 2024
  • learnMSA Public

    Learning and Aligning Large Protein Families (MSA-HMM)

    Gaius-Augustus/learnMSA’s past year of commit activity
    Jupyter Notebook 7 MIT 2 1 0 Updated Jul 4, 2024
  • Augustus Public

    Genome annotation with AUGUSTUS

    Gaius-Augustus/Augustus’s past year of commit activity
    C++ 272 107 147 4 Updated Jul 3, 2024
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Gaius-Augustus/GALBA’s past year of commit activity
    Perl 115 3 7 0 Updated Jul 1, 2024
  • VARUS Public

    RNA-Seq sampling

    Gaius-Augustus/VARUS’s past year of commit activity
    C++ 8 2 4 0 Updated Jul 1, 2024
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Gaius-Augustus/TSEBRA’s past year of commit activity
    Python 42 7 11 0 Updated May 23, 2024
  • BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Gaius-Augustus/BRAKER’s past year of commit activity
    Perl 337 80 114 (3 issues need help) 1 Updated May 13, 2024
  • MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Gaius-Augustus/MakeHub’s past year of commit activity
    Python 33 GPL-3.0 4 0 0 Updated Feb 17, 2024
  • webaugustus Public
    Gaius-Augustus/webaugustus’s past year of commit activity
    Groovy 0 0 0 0 Updated Dec 22, 2023
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