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Adds DICOM Encapsulated PDF section to README.md including example image
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tomaroberts committed Jun 7, 2023
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Expand Up @@ -30,6 +30,8 @@ The TotalSegmentator MAP consists of three operators:
2. `totalsegmentator_operator.py` – runs TotalSegmentator
3. `rtstructwriter_operator.py` – converts the output segmentations from NIfTI to DICOM RT Struct format, using
[rt-utils](https://github.com/qurit/rt-utils/tree/main/rt_utils)
4. `clinrev_pdf_operator.py` – creates a DICOM encapsulated PDF showing three views of the input CT dataset overlaid
with the segmentations generated by TotalSegmentator

## Developer Guidelines

Expand Down Expand Up @@ -127,6 +129,14 @@ Note: two containers are present under GitHub Packages:
The `map` version is for general usage and deployment. The `map-init` version is for developers who wish to build the
MAP from scratch as part of the two-step build process described above.

## DICOM Encapsulated PDF
AIDE Clinical Review is a user interface within AIDE for assessing the quality of AI results. It can display DICOM
Encapsulated PDFs. The screenshot below is an example PDF generated by `clinrev_pdf_operator.py`:

<p align="center">
<img src="docs/images/clinical-review-pdf-example.png" alt="Logo" width="80%">
</p>

## Running on AIDE
To run TotalSegmentator on AIDE, two files from the `app/workflows` directory are required, namely:
- `totalsegmentator.json` – AIDE Clinical Workflow file.
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