JBrowse 1.16.4
Minor improvements
-
Added
indexedFeatures
tracklist attribute for GFF3Tabix track types
which controls the feature types from a GFF3Tabix file that are
indexed. Thanks to @loraine-gueguen for the idea and implementation!
(pull #1337, @loraine-guegen) -
Added
inferHTMLSubfeatures
which automatically creates multiple
mRNA transcripts from a single gene parent feature. Thanks to
@abretaud for the idea and implementation! Note that this is enabled
by default now (pull #1343, pull #1340) -
Updated jbrowse.org website to run entirely off amazon S3 (pull #1347,
pull #1348)
Bug fixes
-
Added better error reporting to GFF3Tabix tracks for if a parsing
error occured. Thanks to @nathanhaigh for reporting (@cmdcolin) -
Added fix for VCF that don't contain alternative alleles (@cmdcolin)
-
Added better error handling if there is a case where a tabix file is
loaded that is on a genome longer than 2^29. CSI indexes are needed for
this. Old versions of tabix which hadn't invented CSI would generate
invalid tabix indexes in this case. Thanks to Hans Vasquez-Gross for
reporting (@cmdcolin) -
Fixed link in documentation. Thanks @agarciamontoro (pull #1341)
-
Fixed issue with ucsc-to-json.pl creating subfeatures with the wrong
strand. Thanks to @sachalau for finding and fixing (pull #1346)