Basic scripts for building and running GEOS on Discover

geos_build/README.md

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+Adapat the `basics.sh` to your local needs. It has been written for Discover and a specific user.

geos_build/serialize/basics.sh

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+#!/bin/bash
+
+# Setup tech stack
+module use -a /discover/nobackup/projects/geosongpu/sw_sles15/live/modulefiles
+module load SMTStack/2024.04.00
+# < load virtual environment to get local NDSL/GT4Py/DaCe >
+
+# GEOS Build directory
+export GEOS_BASEDIR="/discover/nobackup/fgdeconi/work/git/fp"
+export GEOS_BUILDIR="$GEOS_BASEDIR/geos/build_SERIALIZE"
+export GEOS_INSTALLDIR="$GEOS_BASEDIR/geos/install_SERIALIZE"
+
+# Experiments
+export XP_BASEDIR="/discover/nobackup/fgdeconi/work/git/fp/experiments"
+export XP_C24_NAME="TBC_C24_L72"
+export XP_C24="$XP_BASEDIR/$XP_C24_NAME"
+export TBC_SCRIPTS ="/home/mad/work/TinyBCs-GitV10/scripts/"
+
+# Build details
+$BUILD_CORES=48 #how many cores to build

geos_build/serialize/cmake.sh

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+#!/bin/bash
+
+source ./basics.sh
+
+rm -rf $GEOS_BUILDIR
+mkdir -p $GEOS_BUILDIR
+cd $GEOS_BUILDIR
+export TMP="$GEOS_BUILDIR/tmp"
+export TMPDIR=$TMP
+export TEMP=$TMP
+mkdir -p $TMP
+
+export FC=mpif90
+export CC=mpicc
+export CXX=mpic++
+
+cmake .. -DBASEDIR=$BASEDIR/Linux \
+         -DCMAKE_Fortran_COMPILER=mpif90 \
+         -DBUILD_PYFV3_INTERFACE=OFF \
+         -DBUILD_PYMOIST_INTERFACE=OFF \
+         -DCMAKE_INSTALL_PREFIX=$GEOS_INSTALLDIR \
+         -DPython3_EXECUTABLE=`which python3` \
+         -DBUILD_SERIALBOX_SER=ON \
+         -DSERIALBOX_ROOT=$SERIALBOX_ROOT \
+         -DCMAKE_BUILD_TYPE=Debug

geos_build/serialize/make.sh

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+#!/bin/bash
+
+source ./basics.sh
+
+
+cd $GEOS_BUILDIR
+
+export TMP="$GEOS_BUILDIR/tmp"
+export TMPDIR=$TMP
+export TEMP=$TMP
+
+make -j$BUILD_CORES install

geos_build/serialize/serialize.sh

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+#!/bin/bash
+
+source ./basics.sh
+
+./make.sh
+./xp_C24_run.sh

geos_build/serialize/xp_C24_make.sh

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+#!/bin/bash
+
+source ./basics.sh
+
+rm -rf $XP_C24
+mkdir -p $XP_C24
+
+cd $GEOS_INSTALLDIR/bin
+$TBC_SCRIPTS/create_expt.py \
+    --horz c24 --vert 72 \
+    --nonhydro --nooserver \
+    --moist GFDL \
+    --link \
+    --expdir $XP_BASEDIR \
+    $XP_C24_NAME
+
+# Make one day - pre-written script -
+cd $XP_C24
+$TBC_SCRIPTS/makeoneday.bash
+
+# Make 1x1 layout
+sed -e "/^ *NX:/ s/\([0-9]\+\)/1/" AGCM.rc 
+sed -e "/^ *NY:/ s/\([0-9][0-9]\+\)/6/" AGCM.rc
+
+# Make 1ts for serialization
+sed -e '/^JOB_SGMT:/s/000000[0-9][0-9] 000000/00000000 003001/' CAP.rc
+

geos_build/serialize/xp_C24_run.sh

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+#!/bin/bash
+
+# On discover `salloc` first wih ntasks=6
+
+source ./basics.sh
+
+cd $XP_C24
+./gcm_run.j