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GCM is a bit more general than just AGCM #56

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sanAkel
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@sanAkel sanAkel commented Feb 26, 2021

The header Run the GCM needs to reflect the fact that gcm_setup sets up not only AGCM

The header `Run the GCM` needs to reflect the fact that `gcm_setup` sets up not only `AGCM`
@sanAkel sanAkel added the documentation Improvements or additions to documentation label Feb 26, 2021
@sanAkel sanAkel self-assigned this Feb 26, 2021
@sanAkel sanAkel requested a review from a team as a code owner February 26, 2021 11:21
sanAkel added a commit to GEOS-ESM/GEOSgcm that referenced this pull request Feb 26, 2021
The header `Run the GCM` needs to reflect the fact that `gcm_setup` sets up not only `AGCM` 

**Note:**
This same issue exists here (GEOS-ESM/GEOSadas#56), may need the same in _other_ repos as well.
@mathomp4
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Question: Can you actually run the OGCM in what's in GEOSadas-5_27_1_p3? I know we can in the GEOSgcm for sure, but does it work in the ADAS tag?

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sanAkel commented Feb 26, 2021

Question: Can you actually run the OGCM in what's in GEOSadas-5_27_1_p3? I know we can in the GEOSgcm for sure, but does it work in the ADAS tag?

@mathomp4 I would have to clone, build and check. Will try sometime ... and report here.

@sanAkel sanAkel marked this pull request as draft February 26, 2021 20:34
@rtodling
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rtodling commented Mar 4, 2021

Santha: can you change this so that the PR is to merge onto develop instead of main?
The workflow I want for the DAS is user -> develop -> main
The Edit button next to the PR title allows you to redirect the request (I learned it from Matt)

@sanAkel sanAkel changed the base branch from main to develop March 4, 2021 18:57
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I already changed this line to read
Running GCM

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rtodling commented Mar 4, 2021

I suggest we simply close this ticket

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rtodling commented Mar 4, 2021

BTW: the change is still sitting in my work dir since I have another change and have not committed things yet - but I will.

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sanAkel commented Mar 4, 2021

I suggest we simply close this ticket

@rtodling,
I have no problem closing the draft PR.

However, I did follow up on above promise:

  1. cloned: git clone [email protected]:GEOS-ESM/GEOSadas.git
  2. build: ./parallel_build.csh -tmpdir /tmp the -tmpdir /tmp is because of some intel bug that @mathomp4 told me! He would know better.
  3. set up a coupled model exp from scratch: with gcm_setup but clearly did not work since my experiment directory only has:
GEOSgcm.x*
RC/
sedfile
SETENV.commands

Which leads me to ask:

Either way, we must check GCM = AGCM or AOGCM?

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sanAkel commented Mar 4, 2021

For what its worth, following is the STDOUT from gcm_setup:

discover15.sakella 179> gcm_setup 

Enter the Experiment ID:
test_MM
Enter a 1-line Experiment Description:
test_mom5_adas
Do you wish to CLONE an old experiment? (Default: NO or FALSE)

Enter the Atmospheric Horizontal Resolution code:
-----------------------------------------------------------
     Lat/Lon                     Cubed-Sphere
-----------------------------------------------------------
   b --  2  deg                c48  --  2   deg 
   c --  1  deg                c90  --  1   deg 
   d -- 1/2 deg                c180 -- 1/2  deg (56-km) 
   e -- 1/4 deg (35-km)        c360 -- 1/4  deg (28-km)  
   c720 -- 1/8  deg (14-km) 
   c1440 - 1/16 deg ( 7-km) 
             DYAMOND Grids                 
   c768 -- 1/8  deg (12-km) 
   c1536 - 1/16 deg ( 6-km) 
   c3072 - 1/32 deg ( 3-km) 
 
c90
Enter the Atmospheric Model Vertical Resolution: LM (Default: 72)

Do you wish to run the COUPLED Ocean/Sea-Ice Model? (Default: NO or FALSE)
YES

Enter the Ocean Lat/Lon Horizontal Resolution: IM JM (Default: 360 200)

Enter the Ocean Model Vertical Resolution: LM (Default: 50)

Enter the choice of  Land Surface Boundary Conditions using: 1 (Default: Icarus), 2 (Latest Icarus-NL)


Do you wish to run  the Runoff Routing Model? (Default: NO or FALSE)

Do you wish to run GOCART with Actual or Climatological Aerosols? (Enter: A (Default) or C)


Enter the GOCART Emission Files to use: MERRA2 (Default), PIESA, CMIP, NR, MERRA2-DD or OPS:

Enter the directory (/filename) of the HISTORY.AGCM.rc.tmpl to use
(To use HISTORY.AGCM.rc.tmpl from current build, Type:  Current         )
-------------------------------------------------------------------------
Hit ENTER to use Default Location: (HISTORY.AOGCM.rc.tmpl)

 
Enter Desired Location for the HOME Directory (to contain scripts and RC files)
Hit ENTER to use Default Location:
----------------------------------
Default:  /discover/nobackup/sakella/test_MM


Enter Desired Location for the EXPERIMENT Directory (to contain model output and restart files)
Hit ENTER to use Default Location:
----------------------------------
Default:  /discover/nobackup/sakella/test_MM

Enter Location for Build directory containing:  bin/ etc/ include/ etc...
Hit ENTER to use Default Location:
----------------------------------
Default:  /gpfsm/dnb32/sakella/geosDas/develop_04Mar2021/GEOSadas/install

 
Current GROUPS: g0613 s0818 s2313 soca gmaoint advda m2val
Enter your GROUP ID for Current EXP: (Default: advda)
-----------------------------------

sending incremental file list
GEOSgcm.x

sent 210,883,578 bytes  received 35 bytes  60,252,460.86 bytes/sec
total size is 210,832,000  speedup is 1.00
OCEAN_NAME: Undefined variable.

So it died for OCEAN_NAME which is either MOM (=MOM5 by default) or MOM6 which was added to gcm_setup in some version of GEOSgcm. Probably this version of ADAS does not use it (yet). That's my guess. @mathomp4 would you agree?

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Santha: shouldn't I wait to get these updates when we actually have a version of the Git ADAS that pulls the coupled model?

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sanAkel commented Mar 10, 2021

Santha: shouldn't I wait to get these updates when we actually have a version of the Git ADAS that pulls the coupled model?

@rtodling I don't think there is anything missing, in other words,

Git ADAS that pulls the coupled model?

I think already happens! Certainly for the coupled model with MOM5 ocean model. What seems messed up is the stuff in

GEOSadas/components.yaml

Lines 95 to 99 in 3163e9f

GEOSgcm_App:
local: ./src/Applications/@GEOSgcm_App
remote: ../GEOSgcm_App.git
tag: cvs/GEOSadas-5_27_1_p3
develop: develop
which as you to say, will get updated.

For that reason, I didn't feel like closing this PR, but leave it as is in draft. So it serves as a reminder for me to check again. Is that okay with you?

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That's fine Santha

mathomp4 added a commit that referenced this pull request Jul 2, 2021
This fixes something @sanAkel mentioned in #56. Let's just get it taken care of now!
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mathomp4 commented Jul 2, 2021

Fixed in develop.

@mathomp4 mathomp4 closed this Jul 2, 2021
@mathomp4 mathomp4 deleted the sanAkel-patch-1 branch July 2, 2021 11:58
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