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p4est datastructures #780

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Commits on Aug 2, 2021

  1. add lookup tables and helper functions

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  2. clean up and tests for lookup

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Commits on Aug 3, 2021

  1. added parent and child_id

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Commits on Aug 4, 2021

  1. change to UInt8

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  2. fixed parent and included child_id for 2d case

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  3. fixed parent and included child_id for 2d case

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  4. add check in parent for root node, added test for that

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  5. add some comment about child_id ordering

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  6. further test

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Commits on Aug 5, 2021

  1. added descendants, face edge and corner_neighbor, descendants, edge a… 

    …nd corner_neighbor need tests
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Commits on Aug 6, 2021

  1. shifted morton index by 1 and included morton index constructor tests

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  2. include TODOs

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  3. proper docstrings

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  4. AssertionError in test for morton index constructor

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  5. fixed descendants, need to wait for zulip responds to confirm those c… 

    …hanges. should be correct imho
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Commits on Aug 7, 2021

  1. I think I have found a bug in tests and in child_id, now morton inde… 

    …x corresponds to child_id
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  2. fix 2d version of child_id, added tests with child_id morton index ma… 

    …pping
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  3. fixed edge neighbor, included 2D corner neighbor, included tests for … 

    …corner and edge neighbor
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Commits on Aug 9, 2021

  1. maxlevel always last arg with default value based on Burstedde et al.

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Commits on Aug 10, 2021

  1. started adaptive grid

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Commits on Aug 14, 2021

  1. corner neighborhood for 2D

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  2. face neighbor for 2D

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  3. topology for 3D

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Commits on Oct 1, 2022

  1. Merge branch 'master' into mk/adaptivehex

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  2. cleanup topology from the past

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Commits on Oct 7, 2022

  1. Merge branch 'master' into mk/p4est

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  2. add constructor for Octree and Forest

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  3. maximumsize of octant

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Commits on Oct 10, 2022

  1. start of refine, not fully working yet

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  2. Merge branch 'master' into mk/p4est

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  3. refinement works in 2D

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  4. add morton dispatch for dimension 3 and test cases for dimension 3

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Commits on Oct 11, 2022

  1. morton index tests, now works properly, need to generalize with a for… 

    … loop
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Commits on Oct 12, 2022

  1. found a bug in refine included unit tests for all cells refinement do… 

    …wn to the max level
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  2. add parents test

    @koehlerson
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  3. add coarsening with tests; remove the parents test from before (sanit… 

    …y checked within coarsening tests)
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  4. dimension generalization of morton function; parametrization of coord… 

    …inates and everything related
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  5. better but not perfect parametrization for *_neighbor dispatches

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Commits on Oct 14, 2022

  1. dispatch as I wanted

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Commits on Oct 15, 2022

  1. start interfacing the grid interface; non fully working version of tr… 

    …ansform_face (I think works in 3D)
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Commits on Oct 26, 2022

  1. included getcells dispatch without index and with integer index, need… 

    … to generalize for dim=2 and 3
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  2. generalize getcells for idx::Int dispatch

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Commits on Oct 27, 2022

  1. getcells(forest,i) was wrong before, now a version which seems to wor… 

    …k fine
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  2. add md

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  3. add warning for slow dispatches

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Commits on Oct 30, 2022

  1. make md file nice for quarto compilation

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  2. start of getnodes

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  3. Merge branch 'master' into mk/p4est

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Commits on Oct 31, 2022

  1. transform corner and a nonworking version of getnodes

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Commits on Nov 1, 2022

  1. include algorithm paper in md

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Commits on Nov 4, 2022

  1. dimension agnostic child_id and introduction of ancestor_id

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  2. add split_array

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Commits on Nov 5, 2022

  1. little bit of utility and started the search implementation, however,… 

    … dont know how to deal with the callback match
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Commits on Nov 6, 2022

  1. add vertex, face and edge computation of octant

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Commits on Nov 7, 2022

  1. octant boundary sets

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  2. first non-working find_range_boundaries

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Commits on Nov 8, 2022

  1. convenience find_range_boundaries dispatch

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Commits on Dec 13, 2022

  1. merge master and rename test_octant to test_p4est

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Commits on Dec 28, 2022

  1. merge master

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Commits on Feb 21, 2023

  1. merge master

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Commits on Feb 22, 2023

  1. small bug

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Commits on Feb 23, 2023

  1. introduce OctantIndices

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  2. successfully created a over complicated identity mapping

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Commits on Apr 14, 2023

  1. Merge branch 'master' into mk/p4est

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  2. get rid of boundarysettype and use union

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Commits on Apr 17, 2023

  1. typo in recursive algo paper in find_range_boundaries algorithm 4.2 l… 

    …ine 9 B_cap^j should be B_cap^k, figure 4.2 has the correct version; works now for figure example
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  2. add placeholder for isrelevant algorithm 5.1

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Commits on Apr 23, 2023

  1. o instead of 1

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Commits on Jul 3, 2023

  1. merge master for 1.0 compatibility

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  2. visualization script not included in Ferrite; transformation of point… 

    …s from octree coordinate system to physical coordinate system
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  3. 1 based index fun in transform_face

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  4. maybe a 2D working version of getnodes

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Commits on Jul 4, 2023

  1. add refine_all and convenience transform_pointBWG

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Commits on Jul 5, 2023

  1. refine_all and coarsen_all at proper place; included some docs

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  2. help

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Commits on Jul 6, 2023

  1. enhance old algorithm by nodeid and nodeowners; need a isreplaced nod… 

    …e logic for consecutive numbering
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  2. Merge branch 'master' into mk/p4est

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  3. create grid works in 2D I guess

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  4. be in inner peace by distributing with reversed policy

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  5. revert policy again, I'm not smart enough

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Commits on Jul 7, 2023

  1. add script to solve on p4est grid; works for unrefined grid already; … 

    …refined one needs handling of boundarysets
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  2. verify that it works for refinement even though boundarysets have bee… 

    …n explicitely added
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Commits on Jul 19, 2023

  1. Merge branch 'master' into mk/p4est

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Commits on Jul 31, 2023

  1. Merge branch 'master' into mk/p4est

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  2. reconstruct facesets in 2D for refined grid

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  3. fix test

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Commits on Aug 2, 2023

  1. 'localize' comparison of neighboring octree nodes

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  2. simplify vertex similar to face check

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Commits on Aug 4, 2023

  1. start hanging nodes

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  2. interoctree hnodes detection

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  3. I meant intraoctree..

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  4. interoctree works for hanging nodes probably too, need more testing

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  5. solve with constraint

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Commits on Aug 7, 2023

  1. initial nonworking version of balancing intraoctree

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Commits on Aug 8, 2023

  1. Seems like working version of balancing intraoctree, need more tests

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  2. remove bugs and add one more test for balancing

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  3. first interoctree balancing sketch, need further tests, first simple … 

    …test works
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  4. first interoctree balancing sketch, need further tests, first simple … 

    …test works
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  5. more testing; not sure if nc level > 2 needs to be covered interoctre… 

    …e wise; if so current algorithm can't
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  6. first sketch of adaptive manufactured solution; need to bookkeep a sh… 

    …ift for the cellids after previous cellid refined
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  7. manufactured solution 2d adaptivity done

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Commits on Sep 28, 2023

  1. Merge branch 'master' into mk/p4est

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Commits on Oct 4, 2023

  1. started elasticity adaptivity example

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  2. add application of affine constraints

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Commits on Oct 9, 2023

  1. the master of copy-pasta striked again; fixed balancing bug

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  2. first somewhat okayish looking elasticity

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Commits on Oct 10, 2023

  1. non-working L2 Projector

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  2. Add heat example and first hotfix for elasticity example.

    @termi-official
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  3. Hotfix L2 projection with affine constraints.

    @termi-official
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  4. Change solution for heat to something more local. AMR follows the sol… 

    …ution.
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  5. make hotfix nicer

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  6. Fix affine constaint for y component in elasticity example.

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Commits on Oct 11, 2023

  1. add vertex permutations to creategrid

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Commits on Apr 9, 2024

  1. [X-PR] p4est/p8est face transformation fix (#890) 

    @termi-official included face orientation information such that arbitrary meshes can be used. Face orientation information are necessary when transferring the lazy adaptive representation to an actual Ferrite.Grid or equivalently to the same information but in another construct.

Face orientation is included in the `creategrid` function but probably missing in the balancing of the forrest w.r.t. interoctree operation

---------

Co-authored-by: Maximilian Köhler <[email protected]>
Co-authored-by: termi-official <[email protected]>
    @termi-official @koehlerson
    3 people authored Apr 9, 2024
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Commits on Apr 11, 2024

  1. p4est constraint handler integration (#900) 

    * Baseline with bug.

* Test 1

* Fix derp and update test.

* ...

* Cleanup

* Maxis suggestion

* Update src/Dofs/ConstraintHandler.jl

Co-authored-by: Maximilian Köhler <[email protected]>

---------

Co-authored-by: Maximilian Köhler <[email protected]>
    @termi-official @koehlerson
    termi-official and koehlerson authored Apr 11, 2024
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Commits on Apr 30, 2024

  1. [X-PR] p4est edge operations and consistent corner operation (#902) 

    * first version without test of transform_edge

* non working transform_edge due to wrong edge axis vector b

* add more edge_neighbor tests, change the algorithm according to paper and include bool for transform corner in balancing

* probably works

* remote and not remote version

* change bool flag in balancing according to paper for transform_corner

* add transform_corner_remote

* start tests for corner, correct docs for corner and start 3D transform tests

* add first rounds of 3D tests

* remove unnecessary dim parametrization and start some tests for creategrid

* contains_face for 3d case by checking sface centroid in plane of mface

* three dimensional interoctree branch in creategrid

* first working version with edge deduplication and rotation invariance; reorder some stuff in creategrid and more tests needed

* cleanup

* possibleneighbors 3D dispatch

* intratree balancing in 3D works and is tested

* first inter octree 3D balancing, not sure if it works and if not where the problem lies

* rotation tests for balancing; seems to work

* start of hanging edges

* initial hanging edges with two small tests

* failing interoctree hanging nodes detection for rated; hanging faces need rotation

* rotation and easy tests in two and three dimensions

* bit of docs, one more test and a bit of code review

* more review suggestions

* constants for loop

* use iscenter in exlusive edge neighborhood hanging nodes branch

* sane renaming for *_neighbor in hangingnodes; error branch for hanging edge; more strict hanging nodes test

* arrange balancing in functions

* delete unnecessary function

* rename file to BWG.jl

* add corner balancing in 2D

* regression test for corner balancing 2D

* try to fix 1.6 ci

* regression test but rotated

* edge balancing over new topologic connection

* add todo statement for corner balancing in 3D

* maybe final balancing version
    @koehlerson
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Commits on May 2, 2024

  1. multiple corner connections in balancing

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Commits on May 7, 2024

  1. merge master

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Commits on May 9, 2024

  1. remove changes in linear_elasticity.jl docs

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  2. start some devdocs

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  3. update docstrings and remove md file from home directory (moved into … 

    …devdocs)
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  4. a bit more devdocs

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  5. more devdocs

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Commits on May 10, 2024

  1. move things into submodule

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  2. adjust devdocs to submodule

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  3. get_coordinate_eltype in vtk_grid

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  4. use for now different mesh for docs build

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  5. export refine_all into Ferrite namespace

    @koehlerson
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  6. fix doc build

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Commits on May 13, 2024

  1. Apply suggestions from code review 

    Co-authored-by: Knut Andreas Meyer <[email protected]>
    @koehlerson @KnutAM
    koehlerson and KnutAM authored May 13, 2024
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  2. improve devdocs

    @koehlerson
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  3. add relation of size computation and remove once the function call

    @koehlerson
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  4. Update docs/src/devdocs/AMR.md 

    Co-authored-by: Kristoffer Carlsson <[email protected]>
    @koehlerson @KristofferC
    koehlerson and KristofferC authored May 13, 2024
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Commits on May 15, 2024

  1. multiple corner connections test in 2D by disc discretization

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  2. include multiple edge connection case with tests

    @koehlerson
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Commits on May 21, 2024

  1. merge master and hotfix renaming

    @koehlerson
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  2. add some topics docs on AMR

    @koehlerson
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Commits on May 22, 2024

  1. update examples and vtk export for abstractgrid

    @koehlerson
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  2. update ns_vs_diffeq example?

    @koehlerson
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  3. whoopsie

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  4. Update src/Dofs/DofHandler.jl 

    Co-authored-by: Knut Andreas Meyer <[email protected]>
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    koehlerson and KnutAM authored May 22, 2024
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  5. make the pre-commit linter happy

    @koehlerson
    koehlerson committed May 22, 2024
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  6. fix DofHandler definition

    @koehlerson
    koehlerson committed May 22, 2024
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  7. add amr to topics overview

    @koehlerson
    koehlerson committed May 22, 2024
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  8. change tuple in dofhandler construction

    @koehlerson
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Commits on May 23, 2024

  1. change to get_facet_facet_neighborhood

    @koehlerson
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Commits on May 27, 2024

  1. rename face to facet

    @koehlerson
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  2. Merge branch 'master' into mk/p4est

    @koehlerson
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  3. face_neighbor to facet_neighbor

    @koehlerson
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Commits on Jun 10, 2024

  1. include simple maximum marking in elasticity example

    @koehlerson
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  2. add pvd export

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Commits on Jun 12, 2024

  1. change qr for error estimator in elasticity example

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Commits on Jun 13, 2024

  1. resolve reported bug by adjusting the nrefcells logic to something th… 

    …at makes actual sense
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Commits on Jun 17, 2024

  1. [skip ci] test coverage for failing MWEs in 3D

    @termi-official
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Commits on Jun 18, 2024

  1. Derp

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Commits on Jun 19, 2024

  1. typo in hanging nodes; doesn't resolve bug

    @koehlerson
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  2. failing example; something fishy in the conformity info

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  3. Fix shared edge node detection.

    @termi-official
    termi-official committed Jun 19, 2024
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  4. heat_adaptivity 3D version for debugging

    @koehlerson
    koehlerson committed Jun 19, 2024
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