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Refer users to wxPython wiki instead for troubleshooting on Mac OS X.
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jpellman committed Jan 26, 2016
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2 changes: 1 addition & 1 deletion docs/user/_sources/help.txt
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Expand Up @@ -31,7 +31,7 @@ Common Issues and Solutions

#. I'm trying to run the C-PAC GUI on a Mac with Anaconda, but I am being told that I need a "Framework build of python". What is wrong with Anaconda?

Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Specifically, you must set your PYTHONHOME variable to point to your Anaconda environment. To do this, add ``export PYTHONHOME=/home/<your_username>/anaconda`` to your .bash_profile file (in addition to the FSL and AFNI variables), open a fresh terminal, and type `cpac_gui`.
Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Follow the instructions `here <http://wiki.wxpython.org/wxPythonVirtualenvOnMac>`_ to get the GUI up and working.

#. I'm re-running a pipeline, but I am receiving many crashes. Most of these crashes tell me that a file that has been moved or no longer exists is being used as an input for a step in the C-PAC pipeline. What is going on and how can I tell C-PAC to use the correct inputs?

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4 changes: 2 additions & 2 deletions docs/user/help.html
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Expand Up @@ -75,7 +75,7 @@ <h2>Common Issues and Solutions<a class="headerlink" href="#common-issues-and-so
</li>
<li><p class="first">I&#8217;m trying to run the C-PAC GUI on a Mac with Anaconda, but I am being told that I need a &#8220;Framework build of python&#8221;. What is wrong with Anaconda?</p>
<blockquote>
<div><p>Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Specifically, you must set your PYTHONHOME variable to point to your Anaconda environment. To do this, add <tt class="docutils literal"><span class="pre">export</span> <span class="pre">PYTHONHOME=/home/&lt;your_username&gt;/anaconda</span></tt> to your .bash_profile file (in addition to the FSL and AFNI variables), open a fresh terminal, and type <cite>cpac_gui</cite>.</p>
<div><p>Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Follow the instructions <a class="reference external" href="http://wiki.wxpython.org/wxPythonVirtualenvOnMac">here</a> to get the GUI up and working.</p>
</div></blockquote>
</li>
<li><p class="first">I&#8217;m re-running a pipeline, but I am receiving many crashes. Most of these crashes tell me that a file that has been moved or no longer exists is being used as an input for a step in the C-PAC pipeline. What is going on and how can I tell C-PAC to use the correct inputs?</p>
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Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
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</body>
</html>
</html>

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