Skip to content

Commit

Permalink
Fix environmental variable for framework build problem in help
Browse files Browse the repository at this point in the history
  • Loading branch information
jpellman committed Nov 30, 2015
1 parent 22f6da0 commit dae164a
Show file tree
Hide file tree
Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion docs/user/_sources/help.txt
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ Common Issues and Solutions

#. I'm trying to run the C-PAC GUI on a Mac with Anaconda, but I am being told that I need a "Framework build of python". What is wrong with Anaconda?

Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Specifically, you must set your PYTHONPATH variable to point to your Anaconda environment. To do this, add ``export PYTHONPATH=/home/<your_username>/anaconda`` to your .bash_profile file (in addition to the FSL and AFNI variables), open a fresh terminal, and type `cpac_gui`.
Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Specifically, you must set your PYTHONPATH variable to point to your Anaconda environment. To do this, add ``export PYTHONHOME=/home/<your_username>/anaconda`` to your .bash_profile file (in addition to the FSL and AFNI variables), open a fresh terminal, and type `cpac_gui`.

#. I'm re-running a pipeline, but I am receiving many crashes. Most of these crashes tell me that a file that has been moved or no longer exists is being used as an input for a step in the C-PAC pipeline. What is going on and how can I tell C-PAC to use the correct inputs?

Expand Down
2 changes: 1 addition & 1 deletion docs/user/help.html
Original file line number Diff line number Diff line change
Expand Up @@ -75,7 +75,7 @@ <h2>Common Issues and Solutions<a class="headerlink" href="#common-issues-and-so
</li>
<li><p class="first">I&#8217;m trying to run the C-PAC GUI on a Mac with Anaconda, but I am being told that I need a &#8220;Framework build of python&#8221;. What is wrong with Anaconda?</p>
<blockquote>
<div><p>Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Specifically, you must set your PYTHONPATH variable to point to your Anaconda environment. To do this, add <tt class="docutils literal"><span class="pre">export</span> <span class="pre">PYTHONPATH=/home/&lt;your_username&gt;/anaconda</span></tt> to your .bash_profile file (in addition to the FSL and AFNI variables), open a fresh terminal, and type <cite>cpac_gui</cite>.</p>
<div><p>Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Specifically, you must set your PYTHONPATH variable to point to your Anaconda environment. To do this, add <tt class="docutils literal"><span class="pre">export</span> <span class="pre">PYTHONHOME=/home/&lt;your_username&gt;/anaconda</span></tt> to your .bash_profile file (in addition to the FSL and AFNI variables), open a fresh terminal, and type <cite>cpac_gui</cite>.</p>
</div></blockquote>
</li>
<li><p class="first">I&#8217;m re-running a pipeline, but I am receiving many crashes. Most of these crashes tell me that a file that has been moved or no longer exists is being used as an input for a step in the C-PAC pipeline. What is going on and how can I tell C-PAC to use the correct inputs?</p>
Expand Down

0 comments on commit dae164a

Please sign in to comment.