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Implementation of the STEMMUS_SCOPE BMI, +docs +gprc4bmi #89

Merged
merged 44 commits into from
Jan 31, 2024
Merged

Implementation of the STEMMUS_SCOPE BMI, +docs +gprc4bmi #89

merged 44 commits into from
Jan 31, 2024

Commits on Nov 17, 2023

  1. First implementation of the STEMMUS_SCOPE BMI

    @BSchilperoort
    BSchilperoort committed Nov 17, 2023
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Commits on Nov 22, 2023

  1. Use STEMMUS_SCOPE's interactive mode, h5py for IO

    @BSchilperoort
    BSchilperoort committed Nov 22, 2023
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  2. Fix type errors, comply with linters & formatter

    @BSchilperoort
    BSchilperoort committed Nov 22, 2023
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Commits on Nov 28, 2023

  1. Implement all required BMI methods

    @BSchilperoort
    BSchilperoort committed Nov 28, 2023
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  2. Add a notebook demonstrating the BMI

    @BSchilperoort
    BSchilperoort committed Nov 28, 2023
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  3. Fix update_until bug in BMI

    @BSchilperoort
    BSchilperoort committed Nov 28, 2023
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Commits on Nov 29, 2023

  1. Make type hints compatible with py 3.8

    @BSchilperoort
    BSchilperoort committed Nov 29, 2023
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  2. Add set/get value at indices methods

    @BSchilperoort
    BSchilperoort committed Nov 29, 2023
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  3. Apply code formatting

    @BSchilperoort
    BSchilperoort committed Nov 29, 2023
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Commits on Jan 4, 2024

  1. Add support for dockerized model.

    @BSchilperoort
    BSchilperoort committed Jan 4, 2024
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Commits on Jan 10, 2024

  1. Add docker as optional dependency

    @BSchilperoort
    BSchilperoort committed Jan 10, 2024
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  2. Add support for exe file from env. variable.

    @BSchilperoort
    BSchilperoort committed Jan 10, 2024
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  3. Fix volume binds & root file issue. Check image tags.

    @BSchilperoort
    BSchilperoort committed Jan 10, 2024
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  4. WIP Dockerfile for grpc4bmi

    @BSchilperoort
    BSchilperoort committed Jan 10, 2024
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  5. Add start on BMI documentation

    @BSchilperoort
    BSchilperoort committed Jan 10, 2024
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Commits on Jan 11, 2024

  1. Remove Docker container upon clean finalize

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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  2. Move BMI code to bmi module

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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  3. Deprecate Py3.8. Add support for Py3.11

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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  4. Fix typing and formatting issues

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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  5. Add h5py to dependencies

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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  6. Update netcdf4 version pin

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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  7. Split of docker utils. Automagically pull docker image

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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  8. Remove unneeded docker.errors import

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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  9. Make ruff happy

    @BSchilperoort
    BSchilperoort committed Jan 11, 2024
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Commits on Jan 23, 2024

  1. Set GID correctly when starting container.

    @BSchilperoort
    BSchilperoort committed Jan 23, 2024
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  2. Ensure state is writable

    @BSchilperoort
    BSchilperoort committed Jan 23, 2024
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  3. Add matplotlib to dependencies

    @BSchilperoort
    BSchilperoort committed Jan 23, 2024
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Commits on Jan 25, 2024

  1. Make Docker and local process communication more robust

    @BSchilperoort
    BSchilperoort committed Jan 25, 2024
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  2. Add BMI tests w/ Docker (linux only on GH Actions)

    @BSchilperoort
    BSchilperoort committed Jan 25, 2024
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  3. Exclude untestable parts from coverage

    @BSchilperoort
    BSchilperoort committed Jan 25, 2024
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  4. Rename test file to test_bmi_docker. Add first batch of tests.

    @BSchilperoort
    BSchilperoort committed Jan 25, 2024
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Commits on Jan 26, 2024

  1. Expand BMI tests, fix BMI bugs.

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  2. Pin black to previous stable version

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  3. Additional tests for BMI error messages

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  4. Remove unused import

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  5. Add tests for tag validation

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  6. Update BMI documentation, add to mkdocs

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  7. Fix links to BMI notebook

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  8. Add gprc4bmi dockerfile, instructions/docs.

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  9. Correct grpc typo

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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  10. Also correct notebook name

    @BSchilperoort
    BSchilperoort committed Jan 26, 2024
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Commits on Jan 30, 2024

  1. Improve reading of stdout

    @BSchilperoort
    BSchilperoort committed Jan 30, 2024
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  2. Add more explanation to the grpc demo

    @BSchilperoort
    BSchilperoort committed Jan 30, 2024
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  3. Improve the documentation on the docker images/files. 

    Co-authored-by: SarahAlidoost <[email protected]>
    @BSchilperoort @SarahAlidoost
    BSchilperoort and SarahAlidoost authored Jan 30, 2024
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