Add ability to obtain multi level input from ocn and map and pass it back to cism #327

Workflow file for this run

	# CIME scripts regression tests

	name: scripts regression tests

	# Controls when the action will run. Triggers the workflow on push or pull request
	# events but only for the main branch
	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	# This workflow contains a single job called "build"
	build:
	# The type of runner that the job will run on
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [ 3.10.9 ]
	env:
	CC: mpicc
	FC: mpifort
	CXX: mpicxx
	CPPFLAGS: "-I/usr/include -I/usr/local/include "
	LDFLAGS: "-L/usr/lib/x86_64-linux-gnu -lnetcdf -lnetcdff -lpnetcdf"
	# Versions of all dependencies can be updated here
	ESMF_VERSION: v8.6.1
	PARALLELIO_VERSION: pio2_6_2
	CIME_MODEL: cesm
	CIME_DRIVER: nuopc
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it

	- name: Setup Ubuntu Environment
	id: load-env
	run: \|
	set -x
	sudo apt-get update
	sudo apt-get install libxml2-utils
	sudo apt-get install netcdf-bin
	sudo apt-get install libnetcdf-dev
	sudo apt-get install libnetcdff-dev
	sudo apt-get install pnetcdf-bin
	sudo apt-get install libpnetcdf-dev
	sudo apt-get install doxygen
	sudo apt-get install graphviz
	sudo apt-get install wget
	sudo apt-get install gfortran
	sudo apt-get install libjpeg-dev
	sudo apt-get install libz-dev
	sudo apt-get install openmpi-bin
	sudo apt-get install libopenmpi-dev

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- run: echo "PyYAML" > requirements.txt
	- name: Install PyYAML
	run: pip install -r requirements.txt
	# use the latest cesm main
	- name: cesm checkout
	uses: actions/checkout@v4
	with:
	repository: ESCOMP/CESM
	path: cesm
	# this cmeps commit
	- name: cmeps checkout
	uses: actions/checkout@v4
	with:
	path: cesm/components/cmeps

	# Checkout cesm datamodels and support
	# cpl7 is needed - i think that's a bug
	- name: checkout externals
	run: \|
	pushd cesm
	./manage_externals/checkout_externals ccs_config cdeps share mct cpl7 parallelio
	cd ccs_config
	git checkout main
	cd ../
	git clone https://github.com/ESMCI/cime
	cd cime
	if [[ ! -e "${PWD}/.gitmodules.bak" ]]
	then
	echo "Converting [email protected] to https://github.com urls in ${PWD}/.gitmodules"

	sed -i".bak" "s/[email protected]:/https:\/\/github.com\//g" "${PWD}/.gitmodules"
	fi
	git submodule update --init
	cd ../components/cdeps
	git checkout main
	git submodule update --init

	- name: Cache ESMF
	id: cache-esmf
	uses: actions/cache@v4
	with:
	path: ~/ESMF
	key: ${{ runner.os }}-${{ env.ESMF_VERSION }}

	- name: Cache ParallelIO
	id: cache-ParallelIO
	uses: actions/cache@v4
	with:
	path: ${GITHUB_WORKSPACE}/pio
	key: ${{ runner.os }}-${{ env.PARALLELIO_VERSION }}.parallelio

	- name: Cache inputdata
	id: cache-inputdata
	uses: actions/cache@v4
	with:
	path: $HOME/cesm/inputdata
	key: inputdata

	- name: Build ParallelIO
	if: steps.cache-PARALLELIO.outputs.cache-hit != 'true'
	uses: NCAR/ParallelIO/.github/actions/parallelio_cmake@05173a6556ea8d80eb34e3881a5014ea8f4b7543
	with:
	parallelio_version: ${{ env.ParallelIO_VERSION }}
	enable_fortran: True
	install_prefix: ${GITHUB_WORKSPACE}/pio

	- name: Install ESMF
	uses: esmf-org/install-esmf-action@v1
	env:
	ESMF_COMPILER: gfortran
	ESMF_BOPT: g
	ESMF_COMM: openmpi
	ESMF_NETCDF: nc-config
	ESMF_PNETCDF: pnetcdf-config
	ESMF_INSTALL_PREFIX: ${GITHUB_WORKSPACE}/ESMF
	ESMF_PIO: external
	ESMF_PIO_INCLUDE: ${GITHUB_WORKSPACE}/pio/include
	ESMF_PIO_LIBPATH: ${GITHUB_WORKSPACE}/pio/lib
	with:
	version: ${{ env.ESMF_VERSION }}
	esmpy: false
	cache: true


	- name: PREP for scripts regression test
	run: \|
	mkdir -p $HOME/cesm/scratch
	mkdir -p $HOME/cesm/inputdata
	pushd $GITHUB_WORKSPACE/cesm/cime/CIME/tests
	export SRCROOT=$GITHUB_WORKSPACE/cesm/
	export CIME_TEST_PLATFORM=ubuntu-latest
	export PIO_INCDIR=$GITHUB_WORKSPACE/pio/include
	export PIO_LIBDIR=$GITHUB_WORKSPACE/pio/lib
	export PIO_VERSION_MAJOR=2
	export PIO_TYPENAME_VALID_VALUES="netcdf,pnetcdf"
	export NETCDF_PATH=/usr
	export PNETCDF_PATH=/usr
	export LD_LIBRARY_PATH=/usr/lib/libx86_64-linux-gnu/:$LD_LIBRARY_PATH
	cat <<EOF >> $GITHUB_WORKSPACE/cesm/ccs_config/machines/cmake_macros/ubuntu-latest.cmake
	set(NetCDF_Fortran_INCLUDE_DIR /usr/include)
	set(NetCDF_Fortran_LIBRARY /usr/lib/x86_64-gnu-Linux/libnetcdff.so)
	EOF
	printenv >> $GITHUB_ENV
	popd
	- name: scripts regression tests
	run: \|
	pushd $GITHUB_WORKSPACE/cesm/cime/CIME/tests
	./scripts_regression_tests.py --no-fortran-run --compiler gnu --mpilib openmpi --machine ubuntu-latest
	popd
	# the following can be used by developers to login to the github server in case of errors
	# see https://github.com/marketplace/actions/debugging-with-tmate for further details
	# - name: Setup tmate session
	# if: ${{ failure() }}
	# uses: mxschmitt/action-tmate@v3

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Add ability to obtain multi level input from ocn and map and pass it back to cism #327

Workflow file

Add ability to obtain multi level input from ocn and map and pass it back to cism #327

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Workflow file for this run