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Add length to logic format descriptor, needed for nag. #191

Add length to logic format descriptor, needed for nag.

Add length to logic format descriptor, needed for nag. #191

Workflow file for this run

# CIME scripts regression tests
name: scripts regression tests
# Controls when the action will run. Triggers the workflow on push or pull request
# events but only for the main branch
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
# This workflow contains a single job called "build"
build:
# The type of runner that the job will run on
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [ 3.10.9 ]
env:
CC: mpicc
FC: mpifort
CXX: mpicxx
CPPFLAGS: "-I/usr/include -I/usr/local/include "
LDFLAGS: "-L/usr/lib/x86_64-linux-gnu -lnetcdf -lnetcdff -lpnetcdf"
# Versions of all dependencies can be updated here
ESMF_VERSION: v8.5.0
PARALLELIO_VERSION: pio2_6_0
CIME_MODEL: cesm
CIME_DRIVER: nuopc
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- name: Setup Ubuntu Environment
id: load-env
run: |
set -x
sudo apt-get update
sudo apt-get install libxml2-utils
sudo apt-get install netcdf-bin
sudo apt-get install libnetcdf-dev
sudo apt-get install libnetcdff-dev
sudo apt-get install pnetcdf-bin
sudo apt-get install libpnetcdf-dev
sudo apt-get install doxygen
sudo apt-get install graphviz
sudo apt-get install wget
sudo apt-get install gfortran
sudo apt-get install libjpeg-dev
sudo apt-get install libz-dev
sudo apt-get install openmpi-bin
sudo apt-get install libopenmpi-dev
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- run: echo "PyYAML" > requirements.txt
- name: Install PyYAML
run: pip install -r requirements.txt
# use the latest cesm main
- name: cesm checkout
uses: actions/checkout@v3
with:
repository: ESCOMP/CESM
path: cesm
# this cmeps commit
- name: cmeps checkout
uses: actions/checkout@v3
with:
path: cesm/components/cmeps
# Checkout cesm datamodels and support
# cpl7 is needed - i think that's a bug
- name: checkout externals
run: |
pushd cesm
./manage_externals/checkout_externals ccs_config cdeps cime share mct cpl7 parallelio
- name: Cache ESMF
id: cache-esmf
uses: actions/cache@v3
with:
path: ~/ESMF
key: ${{ runner.os }}-${{ env.ESMF_VERSION }}-ESMF1
# - name: cache pnetcdf
# id: cache-pnetcdf
# uses: actions/cache@v3
# with:
# path: ~/pnetcdf
# key: ${{ runner.os }}-${{ env.PNETCDF_VERSION}}-pnetcdf
# - name: Cache netcdf-fortran
# id: cache-netcdf-fortran
# uses: actions/cache@v3
# with:
# path: ~/netcdf-fortran
# key: ${{ runner.os }}-${{ env.NETCDF_FORTRAN_VERSION }}-netcdf-fortran
- name: Cache ParallelIO
id: cache-ParallelIO
uses: actions/cache@v3
with:
path: ~/pio
key: ${{ runner.os }}-${{ env.PARALLELIO_VERSION }}.parallelio
- name: Cache inputdata
id: cache-inputdata
uses: actions/cache@v3
with:
path: $HOME/cesm/inputdata
key: inputdata
# - name: Build PNetCDF
# if: steps.cache-pnetcdf.outputs.cache-hit != 'true'
# uses: ESCOMP/CDEPS/.github/actions/buildpnetcdf@e06246b560d3132170bb1a5443fa3d65dfbd2040
# with:
# pnetcdf_version: ${{ env.PNETCDF_VERSION }}
# install_prefix: $HOME/pnetcdf
# - name: Build NetCDF Fortran
# if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true'
# uses: ESCOMP/CDEPS/.github/actions/buildnetcdff@e06246b560d3132170bb1a5443fa3d65dfbd2040
# with:
# netcdf_fortran_version: ${{ env.NETCDF_FORTRAN_VERSION }}
# install_prefix: $HOME/netcdf-fortran
# netcdf_c_path: /usr
- name: Build ParallelIO
if: steps.cache-PARALLELIO.outputs.cache-hit != 'true'
uses: NCAR/ParallelIO/.github/actions/parallelio_cmake@05173a6556ea8d80eb34e3881a5014ea8f4b7543
with:
parallelio_version: ${{ env.ParallelIO_VERSION }}
enable_fortran: True
install_prefix: /home/runner/pio
- name: Build ESMF
if: steps.cache-esmf.outputs.cache-hit != 'true'
uses: ESCOMP/CDEPS/.github/actions/buildesmf@e06246b560d3132170bb1a5443fa3d65dfbd2040
with:
esmf_version: ${{ env.ESMF_VERSION }}
esmf_bopt: g
esmf_comm: openmpi
install_prefix: ~/ESMF
netcdf_c_path: /usr
netcdf_fortran_path: /usr
pnetcdf_path: /usr
parallelio_path: ~/pio
- name: PREP for scripts regression test
run: |
mkdir -p $HOME/cesm/scratch
mkdir -p $HOME/cesm/inputdata
pushd $GITHUB_WORKSPACE/cesm/cime/CIME/tests
export SRCROOT=$GITHUB_WORKSPACE/cesm/
export CIME_TEST_PLATFORM=ubuntu-latest
export PIO_INCDIR=$HOME/pio/include
export PIO_LIBDIR=$HOME/pio/lib
export PIO_VERSION_MAJOR=2
export PIO_TYPENAME_VALID_VALUES="netcdf,pnetcdf"
export NETCDF_PATH=/usr
export PNETCDF_PATH=/usr
export LD_LIBRARY_PATH=/usr/lib/libx86_64-linux-gnu/:$LD_LIBRARY_PATH
export ESMFMKFILE=$HOME/ESMF/lib/libg/Linux.gfortran.64.openmpi.default/esmf.mk
cat <<EOF >> $GITHUB_WORKSPACE/cesm/ccs_config/machines/cmake_macros/ubuntu-latest.cmake
set(NetCDF_Fortran_INCLUDE_DIR /usr/include)
set(NetCDF_Fortran_LIBRARY /usr/lib/x86_64-gnu-Linux/libnetcdff.so)
EOF
printenv >> $GITHUB_ENV
popd
- name: scripts regression tests
run: |
pushd $GITHUB_WORKSPACE/cesm/cime/CIME/tests
./scripts_regression_tests.py --no-fortran-run --compiler gnu --mpilib openmpi --machine ubuntu-latest
popd
# the following can be used by developers to login to the github server in case of errors
# see https://github.com/marketplace/actions/debugging-with-tmate for further details
- name: Setup tmate session
if: ${{ failure() }}
uses: mxschmitt/action-tmate@v3