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462 Open 373 Closed
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Issues list

Pear (pyrus) genomes classified as apple (malus)
#889 opened Nov 17, 2024 by CeciliaDeng
2
Empty fields in Kraken2 report file generated with version 2.1.3 and PlusPF database
#888 opened Nov 12, 2024 by Seb-vb
High Memory Usage (1TB) for Creating a Kraken2 Database with 400GB of Genomes
#887 opened Nov 7, 2024 by florian-labadie
1
Unable to download Viral Library
#886 opened Nov 4, 2024 by catastrophicmuch99
First non-comment line in pluspf_20240904 inspect.txt is truncated
#885 opened Nov 1, 2024 by yeemey
Custom DB and custom taxonomy (GTDB or similar)
#884 opened Oct 18, 2024 by osvatic
5
kraken2 2.1.9 empty taxonomic level field in k2report
#883 opened Oct 4, 2024 by GODCALLMEGOD
1
18S, ITS, COI and chloroplast data analysis with kraken2
#882 opened Oct 2, 2024 by mars188
Kraken 2 finds spurious minimizers after ambiguous regions
#881 opened Sep 17, 2024 by jtnystrom
Viral Refseq outdated on more than year in comparison with ICTV VMR.39
#880 opened Sep 12, 2024 by igortru
Ambiguous bases being included in confidence score calculation
#878 opened Sep 11, 2024 by mcolpus
1
1
Support zstd input
#877 opened Sep 9, 2024 by mbhall88
Weather could provide a method for comparing multiple samples at once
#876 opened Aug 28, 2024 by PingWang7
3
Use of 16S Data with the Kraken2 Database
#875 opened Aug 28, 2024 by christopherwilliamlee
1
Parameters for database construction and classification with Nanopore v14 chemistry
#874 opened Aug 19, 2024 by rjsorr
How to Extract Specific Genomes or Full-Length rRNA Sequences from kraken2 PlusPF Database
#872 opened Aug 13, 2024 by chenlipeng2019
Is there a way to extract the kmers of a specific species from the Kraken2 database?
#871 opened Aug 9, 2024 by wangzhichao1990
make: *** src: No such file or directory. Stop.
#870 opened Aug 6, 2024 by lauraelf
3
Taxon assignment report not adding up to 100%
#868 opened Aug 5, 2024 by antantjuju
Unable to find k2mask in path, can't mask low-complexity sequences
#865 opened Aug 3, 2024 by zrf-cp
1
Merge two Kraken databases?
#864 opened Aug 1, 2024 by Pablo-UY
2
Avoid sequence ID map to Taxon
#863 opened Aug 1, 2024 by juanjo255
Species-level 16S kraken2 database?
#862 opened Jul 31, 2024 by DntBScrdDv
5
Kraken2 classified first read of the pair and not the other each time when both names are supplied
#861 opened Jul 31, 2024 by kaydadaemon
5
Issue with k2 add-to-library
#859 opened Jul 31, 2024 by ChillarAnand
13
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