Upgrade direct Python dependencies (#6511) #6649

achave11-ucsc · 2024-10-23T15:37:54Z

Connected issues: #6511

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Added p tag to titles of partial commits
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Added r tag to commit title _{or the changes introduced by this PR will not require reindexing of any deployment}
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This PR and its connected issues are labeled API _{or this PR does not modify a REST API}
Added a (A) tag to commit title for backwards (in)compatible changes _{or this PR does not modify a REST API}
Updated REST API version number in app.py _{or this PR does not modify a REST API}

Author (upgrading deployments)

Ran make docker_images.json and committed the resulting changes _{or this PR does not modify azul_docker_images, or any other variables referenced in the definition of that variable}
Documented upgrading of deployments in UPGRADING.rst _{or this PR does not require upgrading deployments}
Added u tag to commit title _{or this PR does not require upgrading deployments}
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Added F tag to main commit title _{or this PR does not include permanent fix for a temporary hotfix}
Reverted the temporary hotfixes for any connected issues _{or the none of the stable branches (anvilprod and prod) have temporary hotfixes for any of the issues connected to this PR}

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Rebased PR branch on develop, squashed old fixups
Ran make requirements_update _{or this PR does not modify requirements*.txt, common.mk, Makefile and Dockerfile}
Added R tag to commit title _{or this PR does not modify requirements*.txt}
This PR is labeled reqs _{or does not modify requirements*.txt}
make integration_test passes in personal deployment _{or this PR does not modify functionality that could affect the IT outcome}

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Changed the target branch of the blocked PR to develop _{or this PR is not labeled base}
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Propagated the deploy:shared, deploy:gitlab, deploy:runner, API, reindex:partial, reindex:anvilprod and reindex:prod labels to the next promotion PRs _{or this PR carries none of these labels}
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Shorthand for review comments

L line is too long
W line wrapping is wrong
Q bad quotes
F other formatting problem

coveralls · 2024-10-23T18:12:48Z

coverage: 85.355% (-0.008%) from 85.363%
when pulling cdecf66 on issues/achave11-ucsc/6511-bump-python-pkgs
into ccc785f on develop.

codecov · 2024-10-23T18:14:49Z

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 85.33%. Comparing base (ccc785f) to head (cdecf66).

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #6649      +/-   ##
===========================================
- Coverage    85.34%   85.33%   -0.01%     
===========================================
  Files          155      155              
  Lines        20785    20774      -11     
===========================================
- Hits         17739    17728      -11     
  Misses        3046     3046

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

dsotirho-ucsc

Even though it is called python-requests in the User-Agent header, it is just the requests package, so I think it should be requests in the commit message:

< [R] Bumped python-requests to 2.32.3 (#6511)
> [R] Bumped requests to 2.32.3 (#6511)

dsotirho-ucsc · 2024-10-28T22:26:36Z

test/azul_test_case.py

@@ -147,6 +147,15 @@ class RE(str):
                    'The \'body\' parameter is deprecated for the \'.*\' API '
                    'and will be removed in .*. Instead use .*'
                ),
+                'validate_spec shortcut is deprecated. Use validate instead.',


This should have a FIXME comment linking to a new issue.

github-actions bot added the orange [process] Done by the Azul team label Oct 23, 2024

achave11-ucsc added the reqs [process] PR includes commit requiring ``make requirements`` label Oct 23, 2024

Fix ordering in requirement files

f6e3df5

achave11-ucsc force-pushed the issues/achave11-ucsc/6511-bump-python-pkgs branch 4 times, most recently from 6892a70 to 2dd0f26 Compare October 23, 2024 17:53

achave11-ucsc force-pushed the issues/achave11-ucsc/6511-bump-python-pkgs branch from 2dd0f26 to f6e3df5 Compare October 28, 2024 17:33

[R] Upgrade direct Python dependencies (#6511)

686c426

achave11-ucsc force-pushed the issues/achave11-ucsc/6511-bump-python-pkgs branch from 8b6db7f to 686c426 Compare October 28, 2024 18:28

achave11-ucsc requested a review from dsotirho-ucsc October 28, 2024 21:15

achave11-ucsc assigned dsotirho-ucsc Oct 28, 2024

dsotirho-ucsc requested changes Oct 28, 2024

View reviewed changes

dsotirho-ucsc removed their assignment Oct 28, 2024

achave11-ucsc added 6 commits October 29, 2024 12:23

[R] Bumped requests to 2.32.3 (#6511)

3f5c1b3

[R] Bump awscli, boto* and moto packages to more recent versions (#6511)

0c311ed

[R] Bump openapi-spec-validator to 0.7.1 (#6511)

5b6049b

Add FIXME (#6666)

d1c3ed3

[R] Bump flake8 to 7.1.1 (#6511)

cbbd907

[R] Ran make requirements_update

cdecf66

achave11-ucsc force-pushed the issues/achave11-ucsc/6511-bump-python-pkgs branch from 5833737 to cdecf66 Compare October 29, 2024 19:34

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Upgrade direct Python dependencies (#6511) #6649

Upgrade direct Python dependencies (#6511) #6649

achave11-ucsc commented Oct 23, 2024 •

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dsotirho-ucsc Oct 28, 2024

Upgrade direct Python dependencies (#6511) #6649

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Upgrade direct Python dependencies (#6511) #6649

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achave11-ucsc commented Oct 23, 2024 • edited Loading

Checklist

Author

Author (partiality)

Author (chains)

Author (reindex, API changes)

Author (upgrading deployments)

Author (hotfixes)

Author (before every review)

Peer reviewer (after approval)

System administrator (after approval)

Operator (before pushing merge the commit)

System administrator

Operator (before pushing merge the commit)

Operator (chain shortening)

Operator (after pushing the merge commit)

Operator (reindex)

Operator

Shorthand for review comments

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codecov bot commented Oct 23, 2024 • edited Loading

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achave11-ucsc commented Oct 23, 2024 •

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