This is the source code of the group website, which was built using Jekyll and Minimal Mistakes.
Important
You should probably read this section!
For certain contributions, it is possible to fill GitHub forms and everything will be automated without requiring to fork or modify the codebase. This currently works for:
- Adding or updating the profile of a lab member
- Adding a paper written by a lab member
- With manual information entry
- With a URL (for limited number of websites)
- Adding all papers by a certain author within a time frame
To get started, click here to open the issue forms.
Note
- If you made a mistake but already submitted the form, please see how to correct it in FAQ.
- If you are looking to build a project website/webpage for your paper, check out the project page template, which has the same style as this website.
Note
Have you tried using issue forms? They should be faster and easier for most of the (simpler) scenarios. This section is only if you need to make custom changes not covered by the forms.
Navigate to _data/authors.yml and add the desired information at the end of the file. It has to follow the following template:
John Doe: # Your full name; this will be used for post `author`
name: "John Doe"
role: "PhD" # One of: "Faculty", "Adjunct Faculty", "Postdoc", "PhD", "Master", "Undergraduate", "Intern"
avatar: "/assets/images/bio/placeholder/default.jpg" # Path to image of you (place in assets/images/bio)
advisor: "John Doe Sr." # The advisor or advisors of the new member
date: "Sep 2030" # Start date. Must be in the "MMM YYYY" format, or "Fall"/"Winter".
bio: "Just some cool student" # Describe the new member (optional)
note: "Co-advised by Amasa L." # Additional notes (optional)
alumni: false # Whether the new member is an alumni
new_role: "Professing at Leland Junior S. University" # If an alumni, their new role
auto_update_publications: false. # Whether to automatically look for new papers published by this author every 2 weeks
links:
- label: "Website"
url: "https://john-doe.github.io/" # Link to website
- label: "GitHub"
url: "https://github.com/john-doe" # Link to Github profile
- label: "Twitter"
url: "https://twitter.com/john-doe" # Link to Twitter profile
- label: "Scholar"
icon: "fas fa-fw fa-graduation-cap" # Font Awesome icon
url: "https://scholar.google.com/citations?user=<user_id>" # Link to Google Scholar profileThis will look like this:
John Doe: Replace John Doe with your full name. This will be what you will use when writing a blog post or a publication abstract, and is required for certain automatic forms. Note that if someone already has the same name, you can append your start date, but that might break some automations.
avatar: Note that the avatar field links to an image located in assets/images/bio. You will need to upload the image to the repository before it shows up. Make sure you choose a picture in jpg (to save space), an aspect ratio of 1:1, resolution of about 300x300, and mainly centered around the face. In a hurry, you may use the default image.
icon: An icon that can be found in the Font Awesome v5 free library. V6 (most recent) will not work. In the HTML snippet, copy the string after class=. For example, if your string is <i class="fab fa-accessible-icon"></i>, then only copy "fas fa-graduation-cap" for the Google Scholar icon. This is optional only when label is "Website", "GitHub", "LinkedIn", or "Twitter". Otherwise, that link will not appear under your name in /people/.
Has a member graduated? Does a member wish to have a new profile picture or bio? You can modify the profile of a member by editing the _data/authors.yml file.
If you wish to delete a member (e.g. added by mistake, duplicates, etc.) you can directly delete their "block" (everything indented after their name) in the _data/authors.yml file.
For any type of page or post (publication, blog post, course description), we use something called "Front Matters" to tell Jekyll about the purpose of the file. This is a block of YAML text at the beginning of the file. The rest of the file is regular markdown.
Warning
This section is for advanced users. You will likely not need it unless you are intend to maintain this website or fix specific issues with page rendering
To modify a page, navigate to _pages and update the desired file. If you add a new file, you will also need to edit the _data/navigation.yml file with the correct relative URL.
The following pages are mostly likely to be frequently updated:
The following pages are not likely to be frequently updated:
Note: If you want to add new content to one of the pages above, please refer to the section on creating a post.
The following files are only meant to be modified by the site maintainer in rare cases:
To remove a page, delete the desired file in _pages/ and delete the corresponding entry in _data/navigation.yml.
You may want to add new content: blog post, a new publication (abstract/more information), or a course description. These are all grouped under posts (in fact, anything that isn't a page is a post). This section will cover how to work with them.
To add a publication, create a new file called <YYYY>-<MM>-<DD>-<shorthand>.md in the _posts/papers directory. Note that <shorthand> will determine the URL of the file, so choose carefully.
Every file should start with the following:
Then, it should be followed with the content in markdown:
*{{ page.names }}*
**{{ page.venue }}**
{% include display-publication-links.html pub=page %}
## Abstract
In our cool paper, we propose a new state-of-the-art method to detect if an image is a hotdot or...It will look like this in /publications/:
Notes:
author: This links to one of the authors in_data/authors.yml. If the author is missing, this will not work.{{ page.names }}is a Jekyll snippet that will display the names of all authors (which was defined right above). This will save you from repeating yourself.{{ page.venue }}is a Jekyll snippet, just like{{ page.names }}.include display-publication-links.htmlwill display the icons and links to code, webpage, tweets, etc.pub=pagerefers to the page object, which is handled by Jekyll.thumbnaillinks to a image located inassets/images/papers. If you don't have one, remove that line. You will need to upload the image to the repository before it shows up. Make sure you choose a picture:- in
jpg(to save space), - an aspect ratio of 4:3 (landscape),
- resolution of about 800x600,
- taken from your paper.
- in
Warning
This section is meant for the maintainer(s) or developers of the site. Please consult the faculty members for more information on how to become a maintainer.
Most of the dependencies (jekyll, ruby, gem, Python requirements.txt, etc.) are already installed thanks to automations in .devcontainer/devcontainer.json. You can simply open the repo in a codespace and start working.
You will need to install the python dependencies by running (from inside project directory):
pip3 install --user -r src/python/requirements.txt
You will need to install ruby and gem to use jekyll locally. This is only if you want to compile and run this site locally. If you want to modify a markdown file or a yaml file, you don't need to do that; please refer to the sections above for instructions. For the instructions, see Jekyll installation (e.g. on Ubuntu).
To run the site locally (or remotely on Codespaces), use the last command in the quickstart:
bundle exec jekyll serveWe use the minimal-mistakes theme. Specifically, we use the remote-theme installation method, which is why the repo doesn't contain all of the html, css, and yaml files required for the theme. To learn more, read this minimal-mistakes doc section. Note we are using a specific version of the theme, which can be found on _config.yml.
If you need to modify some CSS attributes directly, you need to use sass, or directly write CSS (which is still valid). You can create a new file in _sass/custom and import it inside _sass/main.scss. Note that all files in _sass/custom were added by the maintainers of this repo, in addition to the original styling provided by minimal-mistakes.
Here's a brief description:
- _sass/custom/display-publications.scss: Some custom CSS for styling the publications on
/publications/, which did not have the same format in the original minimal-mistakes theme. - _sass/custom/no-sidebar.scss: This adds an option to shift the page to the left side when there's no sidebar. Search for
no-sidebarin _config.yml to see how to use it, or read this post. - _sass/custom/people-card.scss: This is a custom CSS for styling the "cards" for each member in
/people/. - _sass/custom/skin.scss: This is a custom CSS for styling the skin of the website.
_includes/ contains HTML and MD files that can be called from any page. It's something specific to Jekyll. To use it in your page, simply create an HTML file at _includes/my-file.html and add the following to the front matter of your page:
{% include "my-file.html" %}
We have 5 custom include HTML files for this website. You may take a look at their usage by searching include <name>.html across the codebase.
You can create custom html layouts in _layouts/. For example, you can create a file called my-layout.html. It should contain a front matter block, followed by the HTML content:
---
layout: archive
---
{{ content }}
<div>
{% include ... %}
</div>To use them, simply specify, in the front matters of a page in _page/:
---
layout: publication
---Example: In our case, we have a custom publications.html layout for the /publications/ page.
We use Github Actions to automate processes. You can find the files in .github/workflows/, and see their status in the "Actions" tab. This requires you to use YAML.
Some Python scripts are ran inside the actions. You can find them in src/python/. If you want to run them locally, you can use the following command:
pip install -r src/python/requirements.txt
python src/python/<script>.pyReplace <script> with the name of the script. If you want to add some library, you can add it to the requirements.txt file. Make sure to include the full version: <library>==<version>, or else it might break automation. For example, if you want to use the requests library, you can add it to the requirements.txt file as requests==2.18.4.
To modify an issue form, simply edit the corresponding form in .github/ISSUE_TEMPLATE. Note that if you make some major change, you might need to modify the python scripts. Thus, it is recommended to test that on a fork in order to avoid breaking the automation on the main repo.
If you have a question about using Jekyll, start a discussion on the Jekyll Forum or StackOverflow. Other resources:
- Ruby 101
- Setting up a Jekyll site with GitHub Pages
- Configuring GitHub Metadata to work properly when developing locally and avoid
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