Inactive Repository

This project has been replaced by https://github.com/BioGRID/IMS and is maintained for legacy purposes only.

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Introduction

Source Code for future versions of BioGRID IMS, see: http://wiki.thebiogrid.org/doku.php/interaction_management_system For now mainly concerned in porting the IMS2 database schema to the IMS3 schema.

Get latest source from: https://github.com/BioGRID/IMS3

Non RPM requirements

Currently jQUery, bootstrap, and select2 are required but not included in the RPM and not available from default CentOS RPMs. You will need to specify where they are using the /etc/ims.json file.

I think jsTree is going to be required in the future too.

/etc/ims.json

The main configuration file. It can also be located ../ims.json relative to the location if the ims.php file, but that is mainly for developement.

Note, no comments are allowed in JSON files.

title

Whet to display on the top of the IMS3 page

dbs

Accessing databases.

ims

The main database to read and write to.

quick

Access database with constant information.

ims2

Not needed after we sucefully update to the latest database.

css

List of CSS files to be included. See non-RPM rqueires above.

js

List of JavaScript files to be incuded. See non-RPM rqueires above.

pubmed_update

An ISO 8601 date. Publications that have been updated before this date will be refreshed by queries to PubMed.

expries

How long to let somebody be logged on.

ontology_types

ontologies.ontology_name to array of interaction_ontology_types.interaction_ontology_type_shortcode entries. If none specified defaults to ["P"].