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159 Open 274 Closed
159 Open 274 Closed
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Issues list

Error: "bowtie2-build-s does not exist" on Windows
#497 opened Nov 6, 2024 by ivoseverins
Warning: Could not open read file "mRNA.fq" for reading; skipping..
#495 opened Sep 25, 2024 by XRL-1343959526
Could not open read file "mRNA.fq" for reading; skipping.
#494 opened Sep 25, 2024 by XRL-1343959526
1
Error: Encountered internal Bowtie 2 exception (#1)- Error reading _ebwt[] array: no more data
#492 opened Sep 16, 2024 by jefferyUstc
Bowtie2-build "Doing ahead-of-time memory usage test" requires >5 times the amount of memory than is used by the subsequent process.
#490 opened Sep 13, 2024 by wiebepo
error message Expected bowtie2 to be in same directory with bowtie2-align
#489 opened Sep 9, 2024 by andypan0214
1
The discordant and mixed reads identification in Bowtie2
#487 opened Aug 20, 2024 by daisyko
With different read name, the algnment results seem different
#486 opened Aug 19, 2024 by TomhitsJerry
1
Output BAM/SAM omits VN field in @PG header line
#485 opened Aug 10, 2024 by jtoy7
1
Human assembly with bowtie2
#484 opened Aug 7, 2024 by chrissy005
"@" symbol in directory path results in error connected to Config_heavy.pl
#483 opened Jul 31, 2024 by ZRE-Services
2
LIBNCBI_NGS-NOFOUND
#482 opened Jul 17, 2024 by mdsimguy
1
Wrong Windows architecture binaries.
#480 opened Jul 6, 2024 by teepean
2
Error: reads file does not look like a FASTQ file
#479 opened Jun 3, 2024 by jtamames
1
Alignment performance decreases with higher -p option value
#478 opened May 23, 2024 by LawrenceLiu023
6
Alignment Question
#477 opened May 16, 2024 by esdartez
--dpad --gbar
#475 opened May 8, 2024 by zznx
2
--no-mixed --no-discordant
#474 opened May 6, 2024 by zznx
1
Error, fewer reads in file specified with -1 than in file specified with -2
#472 opened Apr 23, 2024 by abulislam
5
bowtie2-build only generate .3.bt2 and .4.bt2 two files
#471 opened Apr 22, 2024 by cyundi
2
Question about pre-alignments
#470 opened Apr 10, 2024 by h20gg702
paired-end reads align receive different when swap R1 with R2
#466 opened Feb 23, 2024 by JBSScience
4
-p/--threads option always uses 1 more thread than is specified.
#465 opened Feb 15, 2024 by leowill01
9
bowtie2 with lower level of alignment when I align an assembly produced by two assemblers
#464 opened Feb 13, 2024 by ksc289
Error while flushing and closing output terminate called after throwing an instance of 'int' (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped)
#463 opened Jan 29, 2024 by Jingyniupp
7
ProTip! Exclude everything labeled bug with -label:bug.