Add R to GATK container (resolves #169)

BD2KGenomics · Aug 22, 2016 · ee75a8f · ee75a8f
1 parent 4b65505
commit ee75a8f
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diff --git a/gatk/Makefile b/gatk/Makefile
@@ -15,7 +15,7 @@ ${build_output}: build/Dockerfile
 
 ${build_tool}: ${build_output} runtime/Dockerfile
 	cd runtime && docker build -t ${name}:${tag} .
-	docker tag -f ${name}:${tag} ${name}:latest
+	docker tag ${name}:${tag} ${name}:latest
 	docker rmi -f gatkbuild
 	touch ${build_tool}
 

diff --git a/gatk/build/Dockerfile b/gatk/build/Dockerfile
@@ -5,7 +5,8 @@ MAINTAINER John Vivian, [email protected]
 RUN apt-get update && apt-get install -y \
 	git \
 	maven \
-	default-jdk
+	default-jdk \
+        r-base
 
 # Create a new source directory
 WORKDIR /home