Support for LabJack DAQ devices #607
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| name: Unit Tests & Code Coverage | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: # allow manual triggering | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| lint: | |
| name: Code style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 | |
| - name: Run flake8 | |
| run: | | |
| flake8 | |
| - name: Run black | |
| uses: rickstaa/action-black@v1 | |
| with: | |
| black_args: ". --check" | |
| install-catalogs: | |
| name: Install & cache databroker catalogs | |
| runs-on: ubuntu-latest | |
| needs: lint | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.11" | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Create Python ${{ matrix.python-version }} environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| cache-environment-key: env-key-${{ matrix.python-version }} | |
| condarc: | | |
| channel-priority: flexible | |
| environment-file: environment.yml | |
| environment-name: anaconda-test-env-py-${{ matrix.python-version }} | |
| - name: Unpack | |
| run: | | |
| which databroker-pack | |
| which databroker-unpack | |
| cd resources | |
| bash ./unpack.sh | |
| cd .. | |
| - name: Directory Listings | |
| run: | | |
| ls -lAFghR ~/.local/ | |
| ls -lAFghR /tmp/*_test/ | |
| - name: Prepare archival content | |
| run: | | |
| mkdir -p ~/databroker_catalogs/ | |
| mv ~/.local ~/databroker_catalogs/ | |
| mv /tmp/*_test ~/databroker_catalogs/ | |
| - name: Archive catalog artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: databroker_catalogs | |
| path: ~/databroker_catalogs | |
| test-matrix: | |
| name: Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| needs: install-catalogs | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Create Python ${{ matrix.python-version }} environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| cache-environment-key: env-key-${{ matrix.python-version }} | |
| condarc: | | |
| channel-priority: flexible | |
| environment-file: environment.yml | |
| environment-name: anaconda-test-env-py-${{ matrix.python-version }} | |
| create-args: >- | |
| coveralls | |
| pytest | |
| pytest-cov | |
| python=${{ matrix.python-version }} | |
| setuptools-scm | |
| - name: Initial diagnostics | |
| run: | | |
| micromamba info | |
| micromamba list | |
| conda config --show-sources | |
| conda config --show | |
| micromamba env list | |
| printenv | sort | |
| - name: Directories before Docker | |
| run: ls -lAFghrt ~/ | |
| - name: Start EPICS IOCs in Docker | |
| run: | | |
| bash ./.github/scripts/iocmgr.sh start GP gp | |
| bash ./.github/scripts/iocmgr.sh start ADSIM ad | |
| docker ps -a | |
| ls -lAFgh /tmp/docker_ioc/iocad/ | |
| ls -lAFgh /tmp/docker_ioc/iocgp/ | |
| - name: Directories after Docker | |
| run: ls -lAFghrt ~/ | |
| - name: Confirm EPICS IOC is available via caget | |
| shell: bash -l {0} | |
| run: | | |
| docker exec iocgp grep float1 /home/iocgp/dbl-all.txt | |
| docker exec iocgp /opt/base/bin/linux-x86_64/caget gp:UPTIME gp:gp:float1 | |
| docker exec iocad /opt/base/bin/linux-x86_64/caget ad:cam1:Acquire_RBV | |
| which caget | |
| caget gp:UPTIME | |
| caget gp:gp:float1 | |
| caget ad:cam1:Acquire_RBV | |
| - name: Confirm EPICS IOC is available via PyEpics | |
| shell: bash -l {0} | |
| run: | | |
| python -c "import epics; print(epics.caget('gp:UPTIME'))" | |
| - name: Confirm EPICS IOC is available via ophyd | |
| shell: bash -l {0} | |
| run: | | |
| CMD="import ophyd" | |
| CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')" | |
| CMD+="; pv = ophyd.EpicsSignalRO('gp:gp:float1', name='pv')" | |
| CMD+="; up.wait_for_connection()" | |
| CMD+="; print(up.get(), pv.get())" | |
| python -c "${CMD}" | |
| - name: Download catalog artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: databroker_catalogs | |
| path: ~/databroker_catalogs | |
| - name: Restore archival content | |
| run: | | |
| mkdir -p ~/.local/share/intake | |
| mv ~/databroker_catalogs/.local/share/intake/* ~/.local/share/intake | |
| mv ~/databroker_catalogs/*_test /tmp/ | |
| - name: Diagnostics | |
| shell: bash -l {0} | |
| run: | | |
| df -HT | |
| micromamba list | |
| - name: Test catalog length, expect 53 | |
| shell: bash -l {0} | |
| run: python -c "import databroker; print(len(databroker.catalog['apstools_test']))" | |
| - name: Run tests with pytest & coverage | |
| shell: bash -l {0} | |
| run: | | |
| coverage run --concurrency=thread --parallel-mode -m pytest -vvv --exitfirst . | |
| coverage combine | |
| coverage report --precision 3 | |
| - name: Upload coverage data to coveralls.io | |
| shell: bash -l {0} | |
| run: | | |
| micromamba list coveralls | |
| which coveralls | |
| coveralls debug | |
| coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| # https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support | |
| coveralls: | |
| name: Report unit test coverage to coveralls | |
| needs: test-matrix | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Gather coverage and report to Coveralls | |
| run: | | |
| echo "Finally!" | |
| pip3 install --upgrade coveralls | |
| # debug mode: output prepared json and reported files list to stdout | |
| # https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html | |
| coveralls debug | |
| coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |