MNT: Bring in recent changes from main to the 2.0 branch

.github/dependabot.yml

@@ -0,0 +1,10 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+    groups:
+      actions:
+        patterns:
+          - "*"

.github/workflows/antivirus.yml

@@ -7,7 +7,7 @@ jobs:
     runs-on: ubuntu-latest
     name: AV scan
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Git AV Scan
       uses: djdefi/gitavscan@main
       with:

.github/workflows/build_docs.yml

@@ -16,7 +16,7 @@ jobs:
       run:
         shell: bash -l {0}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       # Create environment using micromamba
       - name: Install Conda environment with Micromamba
@@ -41,7 +41,7 @@ jobs:
           make html
       # Push the book's HTML to github-pages
       - name: GitHub Pages action
-        uses: peaceiris/actions-gh-pages@v3.8.0
+        uses: peaceiris/actions-gh-pages@v4.0.0
         if: github.ref == 'refs/heads/main'
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/ci.yml

@@ -27,20 +27,20 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.9", "3.10", "3.11"]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
         os: [macos, ubuntu, windows]
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       # Install dependencies
       - name: Setup Conda Environment
         uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: continuous_integration/environment-ci.yml
-          activate-environment: pyart-dev
+          environment-name: pyart-dev
           cache-downloads: true
-          python-version: ${{ matrix.python-version }}
+          create-args: python=${{ matrix.python-version }}
 
       - name: Fetch all history for all tags and branches
         run: |
@@ -54,7 +54,7 @@ jobs:
       - name: Run Linting
         shell: bash -l {0}
         run: |
-          ruff .
+          ruff check .
 
       - name: Run Tests
         id: run_tests
@@ -63,7 +63,7 @@ jobs:
           python -m pytest -v --cov=./ --cov-report=xml
 
       - name: Upload code coverage to Codecov
-        uses: codecov/codecov-action@v2.1.0
+        uses: codecov/codecov-action@v4.5.0
         with:
           file: ./coverage.xml
           flags: unittests

.github/workflows/codeql.yml

@@ -41,11 +41,11 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: github/codeql-action/init@v2
+      uses: github/codeql-action/init@v3
       with:
         languages: ${{ matrix.language }}
         # If you wish to specify custom queries, you can do so here or in a config file.
@@ -59,7 +59,7 @@ jobs:
     # Autobuild attempts to build any compiled languages  (C/C++, C#, Go, or Java).
     # If this step fails, then you should remove it and run the build manually (see below)
     - name: Autobuild
-      uses: github/codeql-action/autobuild@v2
+      uses: github/codeql-action/autobuild@v3
 
     # ℹ️ Command-line programs to run using the OS shell.
     # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -72,6 +72,6 @@ jobs:
     #     ./location_of_script_within_repo/buildscript.sh
 
     - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v2
+      uses: github/codeql-action/analyze@v3
       with:
         category: "/language:${{matrix.language}}"

.github/workflows/linting.yml

@@ -23,9 +23,11 @@ jobs:
     if: ${{ needs.pre-job.outputs.should_skip != 'true' }}
     steps:
       - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.9.1
+        uses: styfle/cancel-workflow-action@0.12.1
         with:
           access_token: ${{ github.token }}
-      - uses: actions/checkout@v2
-      - uses: actions/setup-python@v2
-      - uses: pre-commit/[email protected]
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+      - uses: pre-commit/[email protected]

.github/workflows/wheels.yml

@@ -28,49 +28,52 @@ jobs:
         os: [
           ubuntu-20.04,
           windows-2019,
-          macos-11,
+          macos-14,
+          macos-13,
         ]
       fail-fast: false
 
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
+
+      - name: Install python
+        uses: actions/setup-python@v5
 
       - name: Fetch all history for all tags and branches
         run: |
            git fetch --prune --unshallow
 
       - name: Build wheels for CPython
-        uses: pypa/cibuildwheel@v2.9.0
+        uses: pypa/cibuildwheel@v2.21.1
         with:
           output-dir: dist
         env:
-          CIBW_BUILD: "cp39-* cp310-* cp311-*"
+          CIBW_BUILD: "cp39-* cp310-* cp311-* cp312*"
           CIBW_SKIP: "*-musllinux_*"  #  numpy doesn't have wheels for musllinux so we can't build some quickly and without bloating
           CIBW_ARCHS_LINUX: "x86_64"
-          CIBW_ARCHS_MACOS: x86_64 arm64
           MACOSX_DEPLOYMENT_TARGET: "10.9" # as of CIBW 2.9, this is the default value, pin it so it can't be bumped silently
           CIBW_ARCHS_WINDOWS: "auto64"
           CIBW_BUILD_VERBOSITY: 1
           CIBW_ENVIRONMENT: PIP_ONLY_BINARY=":all:"
 
-      - uses: actions/upload-artifact@v3
+      - uses: actions/upload-artifact@v4
         with:
-          name: wheels
+          name: wheels-${{ matrix.os }}
           path: ./dist/*.whl
 
   build_sdist:
     name: Build source distribution
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Build sdist
         run: pipx run build --sdist
 
       - name: Upload sdist
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: sdist
           path: dist/*.tar.gz
@@ -83,19 +86,20 @@ jobs:
     if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')
     steps:
       - name: Download sdist
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
         with:
           name: sdist
           path: dist
 
       - name: Download wheels
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
         with:
-          name: wheels
+          pattern: wheels-*
           path: dist
+          merge-multiple: true
 
       - name: Publish to PyPI
-        uses: pypa/gh-action-pypi-publish@v1.4.2
+        uses: pypa/gh-action-pypi-publish@v1.10.2
         with:
           user: __token__
           password: ${{ secrets.PYPI_TOKEN }}

.pre-commit-config.yaml

@@ -24,7 +24,7 @@ repos:
       - id: black-jupyter
 
   - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: 'v0.0.239'
+    rev: 'v0.4.9'
     hooks:
       - id: ruff
         args: [ "--fix" ]

CODE_OF_CONDUCT.md

@@ -0,0 +1,129 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our
+community a harassment-free experience for everyone, regardless of age, body
+size, visible or invisible disability, ethnicity, sex characteristics, gender
+identity and expression, level of experience, education, socio-economic status,
+nationality, personal appearance, race, religion, or sexual identity
+and orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming,
+diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our
+community include:
+
+* Demonstrating empathy and kindness toward other people
+* Treating others with dignity and respect
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes,
+  and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the
+  overall community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or
+  advances of any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email
+  address or phone number, without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards of
+acceptable behavior and will take appropriate and fair corrective action in
+response to any behavior that they deem inappropriate, threatening, offensive,
+or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, and will communicate reasons for moderation
+decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies when
+an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail address,
+posting via an official social media account, or acting as an appointed
+representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported to the community leaders responsible for enforcement at
+[email protected].
+All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the
+reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining
+the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed
+unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing
+clarity around the nature of the violation and an explanation of why the
+behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series
+of actions.
+
+**Consequence**: A warning with consequences for continued behavior. No
+interaction with the people involved, including unsolicited interaction with
+those enforcing the Code of Conduct, for a specified period of time. This
+includes avoiding interactions in community spaces as well as external channels
+like social media. Violating these terms may lead to a temporary or
+permanent ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including
+sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public
+communication with the community for a specified period of time. No public or
+private interaction with the people involved, including unsolicited interaction
+with those enforcing the Code of Conduct, is allowed during this period.
+Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community
+standards, including sustained inappropriate behavior,  harassment of an
+individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within
+the community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 2.0, available at
+https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.
+
+Community Impact Guidelines were inspired by [Mozilla's code of conduct
+enforcement ladder](https://github.com/mozilla/diversity).
+
+[homepage]: https://www.contributor-covenant.org
+
+For answers to common questions about this code of conduct, see the FAQ at
+https://www.contributor-covenant.org/faq. Translations are available at
+https://www.contributor-covenant.org/translations.