Merge pull request #39 from ACCESS-NRI/34-add-mule-to-release-payu

Add mule,xarray to release payu environment

.github/workflows/deploy.yml

@@ -50,7 +50,7 @@ jobs:
           conda-lock lock --file env.yml --platform linux-64 --micromamba --lockfile ${{ steps.payu.outputs.name }}.conda-lock.yml
 
       - name: Upload Artifact
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ steps.payu.outputs.name }}
           if-no-files-found: error
@@ -74,7 +74,7 @@ jobs:
     permissions:
       contents: write
     steps:
-      - uses: actions/download-artifact@v3.0.2
+      - uses: actions/download-artifact@v4
         with:
           name: ${{ env.NAME }}
 
@@ -99,14 +99,17 @@ jobs:
           ssh ${{ secrets.USER }}@${{ secrets.HOST }} -i ${{ steps.ssh.outputs.private-key-path }} /bin/bash <<'EOT'
           mkdir ${{ env.PAYU_ENVIRONMENT_LOCATION }}
           if [ $? -ne 0 ]; then
-            exit $?
+            # Replace pre-existing environment
+            echo "::warning::Removing pre-existing environment at: ${{ env.PAYU_ENVIRONMENT_LOCATION }}"
+            rm -rf "${{ env.PAYU_ENVIRONMENT_LOCATION }}"
+            mkdir ${{ env.PAYU_ENVIRONMENT_LOCATION }}
           fi
           tar -xzf ${{ vars.PACK_LOCATION }}/${{ env.NAME }}.tar.gz -C ${{ env.PAYU_ENVIRONMENT_LOCATION }}
           source ${{ env.PAYU_ENVIRONMENT_LOCATION }}/bin/activate
           conda-unpack
           payu --version
           source ${{ env.PAYU_ENVIRONMENT_LOCATION }}/bin/deactivate
-          ln -s ${{ vars.MODULE_LOCATION }}/.common ${{ vars.MODULE_LOCATION }}/${{ env.VERSION }}
+          ln -sf ${{ vars.MODULE_LOCATION }}/.common ${{ vars.MODULE_LOCATION }}/${{ env.VERSION }}
           EOT
 
       # Release

env.yml

@@ -16,3 +16,5 @@ dependencies:
   - nco
   - pytest
   - openssh>=8.3
+  - xarray
+  - mule