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1deg jra55do ryf.cherrypicks #44

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merged 7 commits into from
Aug 23, 2024
Merged

1deg jra55do ryf.cherrypicks #44

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46ac41a
Update exe (https://github.com/COSIMA/access-om3/issues/188), use env…
dougiesquire Aug 2, 2024
a2f27e2
Use netcdf4 for MOM6 (https://github.com/COSIMA/access-om3/issues/188)
dougiesquire Jul 29, 2024
aee4615
Use Payu userscripts from om3-scripts (https://github.com/COSIMA/acce…
dougiesquire Aug 2, 2024
8d59bc9
Set hist_suffix for cice history output. This can only be one charact…
anton-seaice Aug 9, 2024
2f04784
Update input directory name from "input" to "INPUT" (https://github.c…
dougiesquire Aug 2, 2024
fc84180
set cice io consistent with MOM6-CICE6
anton-seaice Aug 21, 2024
978453d
Add comments after ocn_cpl_dt in nuopc.runconfig (#97)
minghangli-uni Aug 7, 2024
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2 changes: 1 addition & 1 deletion MOM_input
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Expand Up @@ -208,7 +208,7 @@ MINIMUM_DEPTH = 0.5
! MINIMUM_DEPTH."

! === module MOM_fixed_initialization ===
INPUTDIR = "./input/"
INPUTDIR = "./INPUT/"
! "The directory in which input files are found."

CHANNEL_CONFIG = global_1deg
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -14,4 +14,4 @@ information.

## Requirements

This configuration requires payu v1.0.29 or greater to run correctly.
This configuration requires [Payu](https://github.com/payu-org/payu) > v1.1.3 to run.
16 changes: 14 additions & 2 deletions config.yaml
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Expand Up @@ -18,8 +18,8 @@ jobname: 1deg_jra55do_ryf

model: access-om3

exe: /g/data/ik11/spack/0.21.2/opt/linux-rocky8-cascadelake/intel-2021.10.0/access-om3-69f719964a27e23deae3923d60af01a081cc3fc0_main-fkzzqnp/bin/access-om3-MOM6-CICE6-WW3
input:
exe: access-om3-MOM6-CICE6-WW3
input:
- /g/data/vk83/experiments/inputs/access-om3/share/meshes/global.1deg/2024.01.25/access-om2-1deg-ESMFmesh.nc
- /g/data/vk83/experiments/inputs/access-om3/share/meshes/global.1deg/2024.01.25/access-om2-1deg-nomask-ESMFmesh.nc
- /g/data/vk83/experiments/inputs/access-om3/share/meshes/share/2024.01.25/JRA55do-ESMFmesh.nc
Expand All @@ -40,3 +40,15 @@ runlog: false

metadata:
enable: false

userscripts:
setup: /usr/bin/bash /g/data/vk83/apps/om3-scripts/payu_config/setup.sh
archive: /usr/bin/bash /g/data/vk83/apps/om3-scripts/payu_config/archive.sh

modules:
use:
- /g/data/ik11/spack/0.21.2/modules/access-om3/0.x.0/linux-rocky8-cascadelake
- /g/data/hh5/public/modules
load:
- access-om3/63ed4a4777aeac0c62720ddbe7f85e4ed16f82eb_main
- conda/analysis3-24.01
36 changes: 18 additions & 18 deletions datm.streams.xml
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Expand Up @@ -11,10 +11,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.prsn.1990_1991.nc</file>
<file>./INPUT/RYF.prsn.1990_1991.nc</file>
</datafiles>
<datavars>
<var>prsn Faxa_prsn</var>
Expand All @@ -32,10 +32,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.prra.1990_1991.nc</file>
<file>./INPUT/RYF.prra.1990_1991.nc</file>
</datafiles>
<datavars>
<var>prra Faxa_prrn</var>
Expand All @@ -53,10 +53,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.rlds.1990_1991.nc</file>
<file>./INPUT/RYF.rlds.1990_1991.nc</file>
</datafiles>
<datavars>
<var>rlds Faxa_lwdn</var>
Expand All @@ -75,10 +75,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.rsds.1990_1991.nc</file>
<file>./INPUT/RYF.rsds.1990_1991.nc</file>
</datafiles>
<datavars>
<var>rsds Faxa_swdn</var>
Expand All @@ -97,10 +97,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.huss.1990_1991.nc</file>
<file>./INPUT/RYF.huss.1990_1991.nc</file>
</datafiles>
<datavars>
<var>huss Sa_shum</var>
Expand All @@ -119,10 +119,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.psl.1990_1991.nc</file>
<file>./INPUT/RYF.psl.1990_1991.nc</file>
</datafiles>
<datavars>
<var>psl Sa_pslv</var>
Expand All @@ -141,10 +141,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.tas.1990_1991.nc</file>
<file>./INPUT/RYF.tas.1990_1991.nc</file>
</datafiles>
<datavars>
<var>tas Sa_tbot</var>
Expand All @@ -163,10 +163,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.uas.1990_1991.nc</file>
<file>./INPUT/RYF.uas.1990_1991.nc</file>
</datafiles>
<datavars>
<var>uas Sa_u</var>
Expand All @@ -185,10 +185,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.vas.1990_1991.nc</file>
<file>./INPUT/RYF.vas.1990_1991.nc</file>
</datafiles>
<datavars>
<var>vas Sa_v</var>
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4 changes: 2 additions & 2 deletions datm_in
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Expand Up @@ -8,8 +8,8 @@
flds_preso3 = .false.
flds_wiso = .false.
iradsw = 1
model_maskfile = "./input/access-om2-1deg-nomask-ESMFmesh.nc"
model_meshfile = "./input/access-om2-1deg-nomask-ESMFmesh.nc"
model_maskfile = "./INPUT/access-om2-1deg-nomask-ESMFmesh.nc"
model_meshfile = "./INPUT/access-om2-1deg-nomask-ESMFmesh.nc"
nx_global = 360
ny_global = 300
restfilm = "null"
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8 changes: 4 additions & 4 deletions drof.streams.xml
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Expand Up @@ -11,10 +11,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.friver.1990_1991.nc</file>
<file>./INPUT/RYF.friver.1990_1991.nc</file>
</datafiles>
<datavars>
<var>friver Forr_rofl</var>
Expand All @@ -32,10 +32,10 @@
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./input/JRA55do-ESMFmesh.nc</meshfile>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./input/RYF.licalvf.1990_1991.nc</file>
<file>./INPUT/RYF.licalvf.1990_1991.nc</file>
</datafiles>
<datavars>
<var>licalvf Forr_rofi</var>
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4 changes: 2 additions & 2 deletions drof_in
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@@ -1,7 +1,7 @@
&drof_nml
datamode = "copyall"
model_maskfile = "./input/access-om2-1deg-nomask-ESMFmesh.nc"
model_meshfile = "./input/access-om2-1deg-nomask-ESMFmesh.nc"
model_maskfile = "./INPUT/access-om2-1deg-nomask-ESMFmesh.nc"
model_meshfile = "./INPUT/access-om2-1deg-nomask-ESMFmesh.nc"
nx_global = 360
ny_global = 300
restfilm = "null"
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11 changes: 6 additions & 5 deletions ice_in
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Expand Up @@ -5,26 +5,27 @@
dumpfreq = "y"
dump_last = .true.
histfreq = "d", "m", "x", "x", "x"
hist_suffix = "", "m", "x", "x", "x" !limited to one character due to https://github.com/COSIMA/access-om3/issues/201
hist_time_axis = "middle"
history_deflate = 1
history_chunksize = 180, 150
history_precision = 8
restart_deflate = 1
ice_ic = "./input/iced.1900-01-01-10800.nc"
ice_ic = "./INPUT/iced.1900-01-01-10800.nc"
npt = 35040
pointer_file = './rpointer.ice'
print_global = .false.
/
&grid_nml
bathymetry_file = "./input/topog.nc"
bathymetry_file = "./INPUT/topog.nc"
grid_atm = "A"
grid_file = "./input/grid.nc"
grid_file = "./INPUT/grid.nc"
grid_format = "nc"
grid_ice = "B"
grid_ocn = "A"
grid_type = "tripole"
kcatbound = 0
kmt_file = "./input/kmt.nc"
kmt_file = "./INPUT/kmt.nc"
nblyr = 1
ncat = 5
nfsd = 12
Expand Down Expand Up @@ -187,4 +188,4 @@
f_taubx = 'x' , f_tauby = 'x'
f_Tref = 'x', f_Qref = 'x'
f_uocn = 'x' , f_vocn = 'x'
/
/
6 changes: 6 additions & 0 deletions input.nml
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Expand Up @@ -20,3 +20,9 @@
cf_compliance = .true.
/

&fms2_io_nml
ncchksz = 4194304
netcdf_default_format = "netcdf4"
deflate_level = 4
shuffle = .true.
/
6 changes: 3 additions & 3 deletions manifests/exe.yaml
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Expand Up @@ -2,7 +2,7 @@ format: yamanifest
version: 1.0
---
work/access-om3-MOM6-CICE6-WW3:
fullpath: /g/data/ik11/spack/0.21.2/opt/linux-rocky8-cascadelake/intel-2021.10.0/access-om3-69f719964a27e23deae3923d60af01a081cc3fc0_main-fkzzqnp/bin/access-om3-MOM6-CICE6-WW3
fullpath: /g/data/ik11/spack/0.21.2/opt/linux-rocky8-cascadelake/intel-2021.10.0/access-om3-63ed4a4777aeac0c62720ddbe7f85e4ed16f82eb_main-xekfuu4/bin/access-om3-MOM6-CICE6-WW3
hashes:
binhash: b281583fa59e6b0ef755e24aee4303ee
md5: 2eb399f40b49a51cfaa0c621adfb381d
binhash: 9a04fbb06b2ced42c850e9f170c61b61
md5: 33fdb18891a41a2ac6202271331db65c
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