Merge pull request #17 from 3D-e-Chem/knime51

KNIME 5.1 support

.github/workflows/build.yml

@@ -0,0 +1,61 @@
+# This workflow will build a Java project with Maven
+# For more information see: https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven
+
+name: Java CI with Maven
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    types: [opened, synchronize, reopened]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+    - name: Set up JDK 17
+      uses: actions/setup-java@v3
+      with:
+        java-version: 17
+        distribution: 'temurin'
+        cache: maven
+    - name: Build and analyze
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}  # Needed to get PR information, if any
+        SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
+      run: xvfb-run mvn -B verify org.sonarsource.scanner.maven:sonar-maven-plugin:sonar -Dsonar.projectKey=3D-e-Chem_knime-plants
+  build-windows:
+    runs-on: windows-latest
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up JDK 17
+      uses: actions/setup-java@v3
+      with:
+        java-version: 17
+        distribution: 'temurin'
+        cache: maven
+    - name: Build
+      run: mvn -B package
+    - name: Test executable
+      run: bin.windows/src/main/resources/bin/PLANTS
+  build-macos:
+    runs-on: macos-latest
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up JDK 17
+      uses: actions/setup-java@v3
+      with:
+        java-version: 17
+        distribution: 'temurin'
+        cache: maven
+    - name: Build
+      run: mvn package
+    - name: Test executable
+      run: bin.macosx/src/main/resources/bin/PLANTS

.mvn/extensions.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<extensions>
+    <extension>
+        <groupId>org.eclipse.tycho</groupId>
+        <artifactId>tycho-build</artifactId>
+        <version>2.7.5</version>
+    </extension>
+</extensions>

CHANGELOG.md

@@ -5,6 +5,12 @@ The file is formatted as described on http://keepachangelog.com/.
 
 ## [Unreleased]
 
+## [0.3.6] 2023-11-22
+
+### Changes
+
+- Requires KNIME 5.1
+
 ## [0.3.5] 2019-06-27
 
 ### Changes

CITATION.cff

@@ -24,8 +24,6 @@ authors:
 - given-names: Chris
   family-names: de Graaf
   affiliation: Vrije Universiteit Amsterdam
-version: v0.3.5
-date-released: 2019-06-27
 repository-code: https://github.com/3D-e-Chem/knime-plants
 license: Apache-2.0
 references:

README.md

@@ -2,19 +2,18 @@
 
 KNIME nodes to configure, run and analyze PLANTS protein-ligand docking
 
-PLANTS homepage at http://www.mnf.uni-tuebingen.de/fachbereiche/pharmazie-und-biochemie/pharmazie/pharmazeutische-chemie/pd-dr-t-exner/research/plants.html
+PLANTS homepage at http://www.tcd.uni-konstanz.de/research/plants.php
 
-[![Build Status Linux & OS X ](https://travis-ci.org/3D-e-Chem/knime-plants.svg?branch=master)](https://travis-ci.org/3D-e-Chem/knime-plants)
-[![Build status Windows ](https://ci.appveyor.com/api/projects/status/wnwuac96jd7v76ri?svg=true)](https://ci.appveyor.com/project/3D-e-Chem/knime-plants)
-[![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=nl.esciencecenter.e3dchem.knime.plants%3Anl.esciencecenter.e3dchem.knime.plants&metric=alert_status)](https://sonarcloud.io/dashboard?id=nl.esciencecenter.e3dchem.knime.plants%3Anl.esciencecenter.e3dchem.knime.plants)
-[![Coverage](https://sonarcloud.io/api/project_badges/measure?project=nl.esciencecenter.e3dchem.knime.plants%3Anl.esciencecenter.e3dchem.knime.plants&metric=coverage)](https://sonarcloud.io/dashboard?id=nl.esciencecenter.e3dchem.knime.plants%3Anl.esciencecenter.e3dchem.knime.plants)
+[![Java CI with Maven](https://github.com/3D-e-Chem/knime-plants/actions/workflows/build.yml/badge.svg)](https://github.com/3D-e-Chem/knime-plants/actions/workflows/build.yml)
+[![Quality Gate Status](https://sonarcloud.io/api/project_badges/measure?project=3D-e-Chem_knime-plants&metric=alert_status)](https://sonarcloud.io/summary/new_code?id=3D-e-Chem_knime-plants)
+[![Coverage](https://sonarcloud.io/api/project_badges/measure?project=3D-e-Chem_knime-plants&metric=coverage)](https://sonarcloud.io/summary/new_code?id=3D-e-Chem_knime-plants)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.997272.svg)](https://doi.org/10.5281/zenodo.997272)
 
 This project uses [Eclipse Tycho](https://www.eclipse.org/tycho/) to perform build steps.
 
 # License
 
-Included in PLANTS nodes plugin is the PLANTS executable with academic license (http://www.mnf.uni-tuebingen.de/fachbereiche/pharmazie-und-biochemie/pharmazie/pharmazeutische-chemie/pd-dr-t-exner/research/plants.html). 
+Included in PLANTS nodes plugin is the PLANTS executable with academic license (http://www.tcd.uni-konstanz.de/research/plants.php). 
 When installing the plugin you have to accept this license agreement, you agree to use the included PLANTS executable only for academic usage.
 To use these nodes in a commercial manner you need to acquire a valid license yourself and configure the PLANTS node to use the commercial executable.
 
@@ -24,13 +23,13 @@ The PLANTS KNIME nodes themselves have the Apache 2.0 license.
 
 Requirements:
 
-* KNIME, https://www.knime.org, version 4.0 or higher
+* KNIME, https://www.knime.org, version 5.1 or higher
 
 Steps to get the PLANTS KNIME node inside KNIME:
 
 1. Goto Help > Install new software ... menu
 2. Press add button
-3. Fill text fields with the `https://3d-e-chem.github.io/updates` update site url.
+3. Fill text fields with the `https://3d-e-chem.github.io/updates/5.1` update site url.
 4. Select --all sites-- in `work with` pulldown
 5. Select the node
 6. Install software
@@ -59,11 +58,11 @@ The update site can be used to perform a local installation.
 
 Steps to get development environment setup based on https://github.com/knime/knime-sdk-setup#sdk-setup:
 
-1. Install Java 8
-2. Install Eclipse for [RCP and RAP developers](https://www.eclipse.org/downloads/packages/release/2018-12/r/eclipse-ide-rcp-and-rap-developers)
-3. Configure Java 8 inside Eclipse Window > Preferences > Java > Installed JREs
+1. Install Java 17
+2. Install Eclipse for [RCP and RAP developers](https://www.eclipse.org/downloads/packages/installer)
+3. Configure Java 17 inside Eclipse Window > Preferences > Java > Installed JREs
 4. Import this repo as an Existing Maven project
-5. Activate target platform by going to Window > Preferences > Plug-in Development > Target Platform and check the `KNIME Analytics Platform (4.0) - nl.esciencecenter.e3dchem.knime.plants.targetplatform/KNIME-AP-4.0.target` target definition.
+5. Activate target platform by going to Window > Preferences > Plug-in Development > Target Platform and check the `KNIME Analytics Platform (5.1) - nl.esciencecenter.e3dchem.knime.plants.targetplatform/KNIME-AP-5.1.target` target definition.
 
 During import the Tycho Eclipse providers must be installed.
 

bin.feature/build.properties

@@ -0,0 +1 @@
+bin.includes = feature.xml