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how do i find out which human genome is used in cnSegmentation #149

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claus-h-g opened this issue Feb 16, 2024 · 0 comments
Open

how do i find out which human genome is used in cnSegmentation #149

claus-h-g opened this issue Feb 16, 2024 · 0 comments

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@claus-h-g
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claus-h-g commented Feb 16, 2024

Hi,
How do can I find out which version of the human genome is used in the cnSegmanetation() funtion. I did not define any additional parameter and try to get an understanding of EPIC V1 arrays?

I did find:

sesameData_check_genome(NULL, "EPIC")
EPIC
"hg38"
Accodding to https://www.ncbi.nlm.nih.gov/grc/human/data?asm=GRCh37

there are 14 patches to hg38 - which version is used?

For downstream use I would like to find out the seqlengths used in the function.
Thanks
Claus

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