upate to Candle 0.8.1

Cargo.toml

@@ -17,12 +17,12 @@ resolver = "2"
 [workspace.dependencies]
 anyhow = "1.0"
 bitflags = "2.6.0"
-candle-core = { git = "https://github.com/huggingface/candle.git", package = "candle-core", features = [
-] }
-candle-examples = { git = "https://github.com/huggingface/candle.git", package = "candle-examples" }
+candle-core = "0.8.1"
+candle-examples = "0.8.1"
 candle-hf-hub = "0.3.3"
-candle-nn = { git = "https://github.com/huggingface/candle.git", package = "candle-nn" }
-candle-transformers = { git = "https://github.com/huggingface/candle.git", package = "candle-transformers" }
+candle-metal-kernels = "0.8.1"
+candle-nn = "0.8.1"
+candle-transformers = "0.8.1"
 itertools = "0.13.0"
 once_cell = "1.20.2"
 pdbtbx = "0.12.0"

ferritin-amplify/Cargo.toml

@@ -12,6 +12,7 @@ metal = ["candle-core/metal", "candle-nn/metal", "candle-metal-kernels"]
 [dependencies]
 anyhow.workspace = true
 candle-core.workspace = true
+candle-metal-kernels = { workspace = true, optional = true }
 candle-nn.workspace = true
 ferritin-test-data = { path = "../ferritin-test-data" }
 rand.workspace = true
@@ -22,7 +23,7 @@ serde.workspace = true
 metal = []
 
 [target.'cfg(target_os = "macos")'.dependencies]
-candle-metal-kernels = { git = "https://github.com/huggingface/candle.git", package = "candle-metal-kernels", optional = true }
+candle-metal-kernels.workspace = true
 
 [target.'cfg(target_arch = "wasm32")'.dependencies]
 tokenizers = { version = "0.21.0", default-features = false, features = [

ferritin-esm/Cargo.toml

@@ -18,13 +18,14 @@ ferritin-test-data = { path = "../ferritin-test-data" }
 rand.workspace = true
 safetensors.workspace = true
 tokenizers.workspace = true
+candle-metal-kernels = { workspace = true, optional = true }
 
 
 [target.'cfg(target_os = "macos")'.features]
 metal = []
 
 [target.'cfg(target_os = "macos")'.dependencies]
-candle-metal-kernels = { git = "https://github.com/huggingface/candle.git", package = "candle-metal-kernels", optional = true }
+candle-metal-kernels.workspace = true
 
 [dev-dependencies]
 candle-examples.workspace = true

ferritin-examples/Cargo.toml

@@ -16,12 +16,14 @@ candle-nn.workspace = true
 clap = { version = "4.5.23", features = ["derive"] }
 ferritin-amplify = { path = "../ferritin-amplify" }
 serde_json.workspace = true
+candle-metal-kernels = { workspace = true, optional = true }
+
 
 [target.'cfg(target_os = "macos")'.features]
 metal = []
 
 [target.'cfg(target_os = "macos")'.dependencies]
-candle-metal-kernels = { git = "https://github.com/huggingface/candle.git", package = "candle-metal-kernels", optional = true }
+candle-metal-kernels.workspace = true
 
 [target.'cfg(target_arch = "wasm32")'.dependencies]
 tokenizers = { version = "0.21.0", default-features = false, features = [

ferritin-ligandmpnn/Cargo.toml

@@ -17,6 +17,7 @@ metal = [
 [dependencies]
 anyhow.workspace = true
 candle-core.workspace = true
+candle-metal-kernels = { workspace = true, optional = true }
 candle-nn.workspace = true
 candle-transformers.workspace = true
 clap = "4.5.23"
@@ -33,7 +34,8 @@ strum = { version = "0.26", features = ["derive"] }
 metal = []
 
 [target.'cfg(target_os = "macos")'.dependencies]
-candle-metal-kernels = { git = "https://github.com/huggingface/candle.git", package = "candle-metal-kernels", optional = true }
+candle-metal-kernels.workspace = true
+
 
 [dev-dependencies]
 candle-examples.workspace = true