_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing these this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'bundle exec jekyll serve'. If you change this file, please restart the server process.

# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.
---
title: "Galaxy Training!"
email: galaxytrainingnetwork@gmail.com
description: A collection of tutorials generated and maintained by Galaxy Community Members across the world
url: "https://training.galaxyproject.org"
baseurl: "/training-material"
github_repository: "https://github.com/galaxyproject/training-material"
github_repository_branch: "main"
gitter_url: "https://gitter.im/Galaxy-Training-Network/Lobby"
logo: "assets/images/GTN.png"
small_logo: "assets/images/GTN-60px.png"
help_url: https://help.galaxyproject.org/
other_languages: #"fr, ja, es, pt, ar"
  en: English
  fr: Français
  ja: 日本語
  es: Español
  pt: Português
  ar: العربية

# Where things are
source: .
destination: ./_site
plugins_dir: _plugins
layouts_dir: _layouts
data_dir: metadata
includes_dir: .

# Conversion
markdown: kramdown
highlighter: rouge
kramdown:
  input: GFM
  syntax_highlighter: rouge
  auto_ids: true
  toc_levels: 1..2


# Figure plugin parameters
figurify:
  skip_empty: true  # or false if you want to generate all figures, even those without any alt or title
  skip_layouts:
    - introduction_slides
    - tutorial_slides
    - base_slides
  skip_titles:
    - Example of an image with a caption

abbreviate:
  skip_layouts:
    - introduction_slides
    - tutorial_slides
    - base_slides

# Icon tag config
icon-tag:
  announcement: fas fa-bullhorn
  arrow-keys: fa fa-arrows
  code-in: far fa-keyboard
  code-out: fas fa-laptop-code
  cofest: fas fa-users
  comment: far fa-comment-dots
  congratulations: far fa-thumbs-up
  curriculum: fas fa-graduation-cap
  details: fas fa-info-circle
  docker_image: fab fa-docker
  email: far fa-envelope
  exchange: fas fa-exchange-alt
  external-link: fas fa-external-link-alt
  switch-histories: fas fa-exchange-alt
  event: far fa-calendar
  feedback: far fa-comments
  galaxy-advanced-search: fas fa-angle-double-down
  galaxy-barchart: fas fa-chart-bar
  galaxy-bug: fas fa-bug
  galaxy-chart-select-data: fas fa-database
  galaxy-clear: fas fa-times-circle
  galaxy-columns: fas fa-columns
  galaxy-cross: fas fa-times
  galaxy-delete: fas fa-trash
  galaxy-dropdown: fas fa-caret-down
  galaxy-history-options: fas fa-caret-down # Replaces gear.
  galaxy-eye: far fa-eye
  galaxy-gear: fas fa-cog
  galaxy-history: fas fa-columns
  galaxy-home: fas fa-home
  galaxy-info: fas fa-info-circle
  galaxy-library: far fa-folder
  galaxy-link: fas fa-link
  galaxy-panelview: fas fa-list
  galaxy-pencil: fas fa-pencil-alt
  galaxy-refresh: fas fa-redo
  galaxy-undo: fas fa-undo
  galaxy-rulebuilder-history: fas fa-history
  galaxy-save: far fa-save
  galaxy-scratchbook: fas fa-th
  galaxy-selector: far fa-check-square
  galaxy-star: far fa-star
  galaxy-tags: fas fa-tags
  galaxy-toggle: fas fa-toggle-on
  galaxy-upload: fas fa-upload
  galaxy-wf-connection: fas fa-arrows-alt-h
  galaxy-wf-edit: fa fa-edit
  galaxy-wf-new: fas fa-plus
  galaxy-wf-report-download: fas fa-print
  galaxy_instance: fas fa-external-link-alt
  github: fab fa-github
  gitter: fab fa-gitter
  gtn-theme: fas fa-palette
  hall-of-fame: fas fa-users
  hands_on: fas fa-pencil-alt
  help: far fa-question-circle
  history-annotate: fas fa-comment
  history-share: fas fa-toggle-on
  instances: fas fa-globe
  interactive_tour: fas fa-magic
  keypoints: fas fa-key
  language: fas fa-language
  last_modification: far fa-calendar
  level: fas fa-graduation-cap
  license: fas fa-balance-scale
  linkedin: fab fa-linkedin
  new-history: fas fa-plus
  notebook: far fa-file-code
  objectives: fas fa-bullseye
  orcid: fab fa-orcid
  param-check: far fa-check-square
  param-collection: far fa-folder
  param-file: far fa-file
  param-files: far fa-copy
  param-repeat: far fa-plus-square
  param-select: fas fa-filter
  param-text: fas fa-pencil-alt
  param-toggle: fas fa-toggle-on
  pref-info: fas fa-user
  pref-password: fas fa-unlock-alt
  pref-identities: far fa-id-card-o
  pref-permissions: fas fa-users
  pref-dataprivate: fas fa-lock
  pref-apikey: fas fa-key
  pref-cloud: fas fa-cloud
  pref-toolboxfilters: fas fa-filter
  pref-custombuilds: fas fa-cubes
  pref-signout: fa fa-sign-out
  pref-notifications: far fa-plus-square
  pref-delete: fas fa-radiation
  question: far fa-question-circle
  references: far fa-bookmark
  requirements: fas fa-check-circle
  rss-feed: fas fa-rss
  search: fas fa fa-search
  slides: fab fa-slideshare
  solution: far fa-eye
  sticky-note: fas fa-sticky-note
  time: fas fa-hourglass-half
  text-document: fas fa-file-alt
  tip: far fa-lightbulb
  tool: fas fa-wrench
  tool-versions: fas fa-cubes
  topic: far fa-folder
  trophy: fas fa-trophy
  tutorial: fas fa-laptop
  twitter: fab fa-twitter
  warning: fas fa-exclamation-triangle
  wf-input: fas fa-chevron-circle-right
  workflow-runtime-toggle: far fa-caret-square-up
  workflow: fas fa-share-alt
  workflow-run: fas fa-play
  video: fas fa-video
  video-slides: far fa-play-circle
  zenodo_link: far fa-copy

# To exclude in _site
exclude:
  - shared/font-awesome/src/
  - Gemfile
  - Gemfile.lock
  - package.json
  - package-lock.json
  - node_modules
  - CONTRIBUTING.md
  - CONTRIBUTORS.yaml
  - CODEOWNERS
  - CODE_OF_CONDUCT.md
  - LICENSE.md
  - README.md
  - Makefile
  - miniconda.sh
  - "**/README.md"
  - "**/*.sh"
  - bin/
  - metadata/
  - templates/
  - vendor/
  - node_modules/
  - .jekyll-cache/
  - snippets
  - plantuml.jar
  - "**/plantuml.jar"
  - Procfile
  - app.json
  - .venv
  # These are provided by an S3 proxy in production
  - videos/topics/
  - "wk-*/**"
include:
  - .nojekyll

# Plugins
plugins:
  - jekyll-feed
  - jekyll-redirect-from

# An announcement to display on the home page
announcement:
  class: success
  title: GTN Smörgåsbord 2023
  text: |
    The Galaxy Training Network is happy to announce the 3rd annual edition of the GTN Smörgåsbord global training event!
    This 5-day, 24/7 training event is completely free, and covers a wide range of topics! During the week, **you** decide your own schedule, pick and choose the topics that are interesting to you, and learn at your own pace, with support from the global community of over 100 Galaxy instructors available on Slack 24/7 to answer your questions!

    [Register today!](https://gallantries.github.io/video-library/events/smorgasbord3/?utm_source=gtn-button&utm_medium=website&utm_campaign=smorgasbord2023){: .btn.btn-success}

# A banner image that can be displayed separately for short wide banner images. Alt text is mandatory.
banner_image:
  source: "https://gallantries.github.io/assets/images/smorgasbord3/png/banner-email.png"
  link: "https://gallantries.github.io/video-library/events/smorgasbord3/?utm_source=gtn-banner&utm_medium=website&utm_campaign=smorgasbord2023"
  alt: |
    The Gallantries, Galaxy Training Network & Galaxy Community are happy to announce: GTN Smorgasbord 3, gxy.io/smorgasbord3 a free galaxy training event, online, from may 22-26 2023. Topics covered include SARS-CoV-2, RNA-Seq, Single Cell, Proteomics, Machine Learning, Annotation, Climate, Ecology, Cancer, RO-Crates, and more! An EU flag in the corner indicates that this event is made possible with the support of the european union. A waterman butterfly projection map adorns the other corner suggesting a world wide event. Links are included to @gtn@mstdn.science @gallantries@mstdn.science, and two twitter urls @gxyTraining and @gallantries_eu