Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Identify PTMs #9

Open
ariutta opened this issue Oct 21, 2019 · 0 comments
Open

Identify PTMs #9

ariutta opened this issue Oct 21, 2019 · 0 comments
Labels
CPTAC Related to CPTAC project enhancement New feature or request

Comments

@ariutta
Copy link
Member

ariutta commented Oct 21, 2019

We could identify PTMs gene products, e.g.: phosphorylation, acetylation and ubiquitination. In slack, @AlexanderPico described the low-hanging fruit we could go after:

One easy target would be when folks name entities with a “-p” or “-P” suffix or prefix. We currently strip these away in our transformations, so I know there are a few.

The more difficult ones to identify would be the gene products with a state attached like a P in a circle, e.g.:
Transient_Dendritic_Spine_Growth_following_High-Frequency_Stimulation
https://commons.wikimedia.org/wiki/File:Transient_vs._Sustained_Dendritic_Spine_Growth_following_High-Frequency_Stimulation.jpg

@ariutta ariutta added the enhancement New feature or request label Oct 21, 2019
@AlexanderPico AlexanderPico added the CPTAC Related to CPTAC project label Dec 21, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
CPTAC Related to CPTAC project enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

2 participants