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Add OMEXML "equivalent" for zarr based images #93

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manzt opened this issue May 5, 2020 · 0 comments
Open

Add OMEXML "equivalent" for zarr based images #93

manzt opened this issue May 5, 2020 · 0 comments

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@manzt
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manzt commented May 5, 2020 •
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Description

Metadata is not standardized in zarr, but with hms-dbmi/viv#178 and hms-dbmi/viv#158 we need to make these data available for zarr-based images.

Proposed Solution

Parse OMEXML for each image we process and add flattened to root .zattrs under omeMetadata` key.
@manzt manzt changed the title Add OMEXML "equivalent" zarr based images Add OMEXML "equivalent" for zarr based images May 5, 2020
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@manzt