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index-africa.html
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<!DOCTYPE html>
<html lang="en">
<head>
<title>Galaxy Europe</title>
<meta property="og:title" content="" />
<meta property="og:description" content="" />
<meta property="og:image" content="/assets/media/galaxy-eu-logo.512.png" />
<meta name="description" content="The European Galaxy Instance">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<link rel="stylesheet" href="/assets/css/bootstrap.min.css">
<link rel="stylesheet" href="/assets/css/main.css">
<link rel="canonical" href="https://galaxyproject.eu/index-africa.html">
<link rel="shortcut icon" href="/assets/media/galaxy-eu-logo.64.png" type="image/x-icon" />
<link rel="alternate" type="application/rss+xml" title="Galaxy Europe" href="/feed.xml">
<link href="/assets/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-wvfXpqpZZVQGK6TAh5PVlGOfQNHSoD2xbE+QkPxCAFlNEevoEH3Sl0sibVcOQVnN" crossorigin="anonymous">
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</head>
<body>
<div id="wrap">
<div id="main">
<div class="container" id="maincontainer">
<div class="home">
<p><img src="68950141.png" alt="African Galaxy" class="sc-intro-left" /></p>
<h1 class="no_toc" id="this-is-the-african-galaxy-server-welcome-home">This is the African galaxy server, Welcome Home!</h1>
<p>Hi there! Welcome to the African Galaxy workbench; a comprehensive set of tools and workflows dedicated to accelerate your bioinformatics analyses. This workbench is built on the Galaxy framework, which guarantees simple access, easy extension, flexible adaptation to personal and security needs, and sophisticated analyses independent of command-line knowledge. Simply put, this is your bioinformatics “plug and play”.
The current implementation comprises more than 2000 bioinformatics tools dedicated to different bioinformatics research applications such as Genomics, Epigenomics, Phylogenetics, Transcriptomics, Microbiology and many more.</p>
<p><br /></p>
<ol id="markdown-toc">
<li><a href="#getting-started" id="markdown-toc-getting-started">Getting Started</a></li>
<li><a href="#training" id="markdown-toc-training">Training</a></li>
<li><a href="#tool-categories" id="markdown-toc-tool-categories">Tool Categories</a></li>
<li><a href="#appreciation" id="markdown-toc-appreciation">Appreciation</a></li>
</ol>
<h1 id="getting-started">Getting Started</h1>
<p>Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take <a href="https://africa.usegalaxy.eu/tours/core.galaxy_ui" target="_blank">a guided tour</a> through Galaxy’s user interface.</p>
<h1 id="training">Training</h1>
<p>From theoretical understanding to practical implementation on this workbench, we are passionate about training. So we work in close collaboration with the <a href="https://galaxyproject.org/teach/gtn/" target="_blank">Galaxy Training Network (GTN)</a> to develop training materials of data analyses based on Galaxy <a class="citation" href="#batut2017community">(Batut <i>et al.</i>, 2017)</a>. These materials hosted on the GTN GitHub repository are available online at <a href="https://training.galaxyproject.org" target="_blank">https://training.galaxyproject.org</a>.</p>
<h1 id="tool-categories">Tool Categories</h1>
<ul>
<li>NGS Data QC and Preprocessing
<ul>
<li>Quality Control</li>
<li>Data Prepreocessing</li>
</ul>
</li>
<li>Genomics
<ul>
<li>Genome assembly</li>
<li>Genome Annotation</li>
<li>Variant Analysis</li>
</ul>
</li>
<li>Transcriptomics
<ul>
<li>Bulk RNA Sequencing</li>
<li>Single RNA Sequencing
Epigenetics</li>
<li>Chip-Seq</li>
<li>ATAC-Seq</li>
<li>Bisulfite Sequencing
Metagenomics</li>
<li>16S metagenomics</li>
<li>Metatranscriptomics
Machine learning</li>
<li>Classification & Regression</li>
<li>Clustering</li>
<li>Regression</li>
<li>Deep learning</li>
</ul>
</li>
</ul>
<h1 id="appreciation">Appreciation</h1>
<p>We sincerely appreciate the efforts of all individuals and their organizations for supporting the African Galaxy Instance. Join the community <a href="https://gitter.im/GalaxyAfrica/community">here</a></p>
<ol class="bibliography"><li><span id="index-africa-batut2017community">Batut,B. <i>et al.</i> (2017) Community-driven data analysis training for biology. <i>BioRxiv</i>, 225680.</span></li></ol>
<h2>Our Data Policy</h2>
<table class="table table-striped">
<thead>
<tr>
<th>Registered Users</th><th>Unregistered Users</th><th>FTP Data</th><th>GDPR Compliance</th>
</tr>
</thead>
<tbody>
<tr>
<td>User data on UseGalaxy.eu (i.e. datasets, histories) will be available as long
as they are not deleted by the user. Once marked as deleted the datasets will
be permanently removed within 14 days. If the user "purges" the dataset in the
Galaxy, it will be removed immediately, permanently.
An <a href="https://docs.google.com/forms/d/e/1FAIpQLSf9w2MOS6KOlu9XdhRSDqWnCDkzoVBqHJ3zH_My4p8D8ZgkIQ/viewform" target="_blank">extended quota can be requested</a>
for a limited time period in special cases.
</td>
<td>Processed data will only be accessible during one browser session, using a
cookie to identify your data. This cookie is not used for any other purposes
(e.g. tracking or analytics).
If UseGalaxy.eu service is not accessed for 90 days, those datasets will be
permanently deleted.
</td>
<td>Any user data uploaded to our <a href="https://galaxyproject.eu/ftp/">FTP server</a> should be imported into Galaxy as soon
as possible. Data left in FTP folders for more than 3 months, will be deleted.
</td>
<td>The Galaxy service complies with the EU General Data Protection Regulation
(GDPR). You can read more about this on our
<a href="https://usegalaxy.eu/terms/">Terms and Conditions</a>.</td>
</tr>
</tbody>
</table>
<!-- <h4>Registered Users</h4>
User data on UseGalaxy.eu (i.e. datasets, histories) will be available as long
as they are not deleted by the user. Once marked as deleted the datasets will
be permanently removed within 14 days. If the user "purges" the dataset in the
Galaxy, it will be removed immediately, permanently.
An <a href="https://docs.google.com/forms/d/e/1FAIpQLSf9w2MOS6KOlu9XdhRSDqWnCDkzoVBqHJ3zH_My4p8D8ZgkIQ/viewform" target="_blank">extended quota can be requested</a>
for a limited time period in special cases.
<h4>Unregistered Users</h4>
Processed data will only be accessible during one browser session, using a
cookie to identify your data. This cookie is not used for any other purposes
(e.g. tracking or analytics).
If UseGalaxy.eu service is not accessed for 90 days, those datasets will be
permanently deleted.
<h4>FTP Data</h4>
Any user data uploaded to our <a href="https://galaxyproject.eu/ftp/">FTP server</a> should be imported into Galaxy as soon
as possible. Data left in FTP folders for more than 3 months, will be deleted.
<h4>GDPR Compliance</h4>
The Galaxy service complies with the EU General Data Protection Regulation
(GDPR). You can read more about this on our
<a href="https://usegalaxy.eu/terms/">Terms and Conditions</a>.
-->
<div>
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<p>UseGalaxy.eu is maintained largely by the <a href="/freiburg/">Freiburg Galaxy Team</a> but also collectively by groups and individuals from across Europe. All of the member sites in this repository contribute to the European Galaxy Project.
For <strong>acknowledgement</strong>, please refer to the <a href="/about">About</a> section.
All content on this site is available under <a href="https://creativecommons.org/share-your-work/public-domain/cc0/">CC0-1.0</a> unless otherwise specified.</p>
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