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benchmark_config.yml.usegalaxyeu
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benchmark_config.yml.usegalaxyeu
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galaxy:
url: "https://usegalaxy.eu"
# Check, if tools need to be installed when running GalaxyWorkflow (can be turned off after first benchmark-run)
shed_install: false
# Should Galaxy be configured to use the given Destinations or is everything already set?
configure_job_destinations: false
user_key: YOUR-REGULAR-USER-KEY
# Configure all the Destinations that should be benchmarked
destinations:
- name: YourDestinationName
type: Galaxy
galaxy_user_key: YOUR-USER-KEY-FOR-DESTINATION-USER
workflows:
- name: ard
type: Galaxy
path: /workflow-testing/sklearn/ard/ard.ga
timeout: 5000 # Optional. Workflow will be canceled after timeout.
- name: gromacs
type: Galaxy
path: /workflow-testing/training/computational-chemistry/gromacs/gromacs.ga
timeout: 5400
- name: mapping_by_sequencing
type: Galaxy
path: /workflow-testing/training/variant-analysis/mapping-by-sequencing/mapping_by_sequencing.ga
timeout: 5400
- name: adaboost
type: Galaxy
path: /workflow-testing/sklearn/adaboost/adaboost.ga
timeout: 1200
- name: ard
type: Galaxy
path: /workflow-testing/sklearn/ard/ard.ga
timeout: 1200
benchmarks:
- name: BenchmarkName
type: DestinationComparison
destinations:
- YourDestinationName
workflows:
- ard
- adaboost
- gromacs
- mapping_by_sequencing
runs_per_workflow: 5
warmup: true
# Please do not change!
influxdb:
host: influxdb
port: 8086
username: glx_benchmarker
password: glx_benchmarker
db_name: glx_benchmarker