Funannotate not working

[B0r1sD]

User has problem running Funannotate on useGalaxy.be. Error report:

Traceback (most recent call last):
  File "/srv/galaxy/shared/src/lib/galaxy/jobs/runners/__init__.py", line 632, in _finish_or_resubmit_job
    job_wrapper.finish(
  File "/srv/galaxy/shared/src/lib/galaxy/jobs/__init__.py", line 1821, in finish
    import_model_store = store.get_import_model_store_for_directory(
  File "/srv/galaxy/shared/src/lib/galaxy/model/store/__init__.py", line 1383, in get_import_model_store_for_directory
    raise Exception(
Exception: Could not find import model store for directory [/srv/galaxy/shared/database/tmp/jobs/000/604/604783/metadata/outputs_populated] (full path [/srv/galaxy/shared/database/tmp/jobs/000/604/604783/metadata/outputs_populated])

This error refers to quite important scripts, init.py en set_metadata.py. Pulsar also makes use of this, not sure if related to recent Pulsar setup: https://github.com/galaxyproject/pulsar/blob/e726e5a4c679cd635edaa1c12d8154bbc4e58660/pulsar/client/staging/__init__.py#L25.

This tool has generally giving Galaxy admins some problems. Database issues here: https://usegalaxy.eu/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Ffunannotate_compare%2Ffunannotate_compare%2F1.8.15%2Bgalaxy5&version=latest with more info here. Might only work on .eu at the moment.

The wrapper is also non-standard, as due to the licensing of the dependency GeneMark some installation steps need to be taken in the backend in order for this tool to work (see README.md). I don't know if this has been done (I assume not). But as the user doesn't seem to make use of this, it's likely not related to this specific issue.

This problem occurs in both an older and the newest tool wrapper version (1.8.15+galaxy5). I see there is also a Funannotate_suite that can be installed via the tools install admin panel, instead of installing them separately. Maybe installing the suite solves this issue (suit and separate tools are both maintained by IUC so I more mentioning this then thinking it would solve this).