GTN_tutorials_tools.yaml

install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: fastqc
  owner: devteam
  revisions:
  - e7b2202befea
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastq_paired_end_interlacer
  owner: devteam
  revisions:
  - 2ccb8dcabddc
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
  owner: iuc
  revisions:
  - b2f1f75d49c4
  tool_panel_section_label: Quality Control
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: velvet
  owner: devteam
  revisions:
  - 5da9a0e2fb2d
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
  revisions:
  - 59db8ea8c845
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: flye
  owner: bgruening
  revisions:
  - 276f5d8712d5
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasta_stats
  owner: iuc
  revisions:
  - 0dbb995c7d35
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: busco
  owner: iuc
  revisions:
  - 46ae58b1d792
  tool_panel_section_label: Annotation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
  revisions:
  - 7594365c546b
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_fastx
  owner: iuc
  revisions:
  - a8d69aee190e
  tool_panel_section_label: SAM/BAM
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
  owner: nml
  revisions:
  - 830961c48e42
  tool_panel_section_label: Collection Operations
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: seqtk
  owner: iuc
  revisions:
  - 58c8ece95b53
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: unicycler
  owner: iuc
  revisions:
  - 88c240872a65
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bandage
  owner: iuc
  revisions:
  - b2860df42e16
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastp
  owner: iuc
  revisions:
  - 1d8fe9bc4cb0
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasta_filter_by_length
  owner: devteam
  revisions:
  - 8cacfcf96a52
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: nanoplot
  owner: iuc
  revisions:
  - 645159bcee2d
  tool_panel_section_label: Nanopore
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
  owner: iuc
  revisions:
  - 53c0b7a1a0c3
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
  owner: iuc
  revisions:
  - b2f1f75d49c4
  tool_panel_section_label: Quality Control
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bowtie2
  owner: devteam
  revisions:
  - 749c918495f7
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_view
  owner: iuc
  revisions:
  - b01db2684fa5
  tool_panel_section_label: SAM/BAM
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_stats
  owner: devteam
  revisions:
  - 145f6d74ff5e
  tool_panel_section_label: SAM Tools
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_stats
  owner: devteam
  revisions:
  - 145f6d74ff5e
  tool_panel_section_label: SAM Tools
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_view
  owner: iuc
  revisions:
  - b01db2684fa5
  tool_panel_section_label: SAM/BAM
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_fastx
  owner: iuc
  revisions:
  - a8d69aee190e
  tool_panel_section_label: SAM/BAM
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
  owner: nml
  revisions:
  - 830961c48e42
  tool_panel_section_label: Collection Operations
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: seqtk
  owner: iuc
  revisions:
  - 58c8ece95b53
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: unicycler
  owner: iuc
  revisions:
  - 88c240872a65
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bandage
  owner: iuc
  revisions:
  - b2860df42e16
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasta_filter_by_length
  owner: devteam
  revisions:
  - 8cacfcf96a52
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: sra_tools
  owner: iuc
  revisions:
  - aad3885b3216
  tool_panel_section_label: Get Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastp
  owner: iuc
  revisions:
  - 1d8fe9bc4cb0
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: nanoplot
  owner: iuc
  revisions:
  - 645159bcee2d
  tool_panel_section_label: Nanopore
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
  owner: iuc
  revisions:
  - 53c0b7a1a0c3
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
  owner: iuc
  revisions:
  - b2f1f75d49c4
  tool_panel_section_label: Quality Control
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bowtie2
  owner: devteam
  revisions:
  - 749c918495f7
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: gfa_to_fa
  owner: iuc
  revisions:
  - e33c82b63727
  tool_panel_section_label: Convert Formats
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: cutadapt
  owner: lparsons
  revisions:
  - 48f587c13075
  tool_panel_section_label: FASTA/FASTQ
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: busco
  owner: iuc
  revisions:
  - 46ae58b1d792
  tool_panel_section_label: Annotation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: purge_dups
  owner: iuc
  revisions:
  - a315c25dc813
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
  owner: nml
  revisions:
  - 90981f86000f
  tool_panel_section_label: Collection Operations
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
  owner: iuc
  revisions:
  - 11a0d50a54e6
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
  revisions:
  - 875d0f36d66f
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: meryl
  owner: iuc
  revisions:
  - eadfd71dde37
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: merqury
  owner: iuc
  revisions:
  - 39edec572bae
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: genomescope
  owner: iuc
  revisions:
  - 3169a38c2656
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: column_maker
  owner: devteam
  revisions:
  - 02026300aa45
  tool_panel_section_label: Text Manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bionano_scaffold
  owner: bgruening
  revisions:
  - 5258e18bbe23
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bellerophon
  owner: iuc
  revisions:
  - 25ca5d73aedf
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: text_processing
  owner: bgruening
  revisions:
  - ddf54b12c295
  tool_panel_section_label: Text Manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bedtools
  owner: iuc
  revisions:
  - 7ab85ac5f64b
  tool_panel_section_label: Operate on Genomic Intervals
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: pretext_map
  owner: iuc
  revisions:
  - dfb8a4497339
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: pretext_snapshot
  owner: iuc
  revisions:
  - 44c66e8d21e6
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: salsa
  owner: iuc
  revisions:
  - f77f7a7f3b83
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bwa_mem2
  owner: iuc
  revisions:
  - b4a22d90cce9
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: busco
  owner: iuc
  revisions:
  - 0d243f458b53
  tool_panel_section_label: Annotation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
  revisions:
  - ebb0dcdb621a
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastp
  owner: iuc
  revisions:
  - 1d8fe9bc4cb0
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: meryl
  owner: iuc
  revisions:
  - eadfd71dde37
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: genomescope
  owner: iuc
  revisions:
  - 3169a38c2656
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: nanoplot
  owner: iuc
  revisions:
  - edbb6c5028f5
  tool_panel_section_label: Nanopore
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastqc
  owner: devteam
  revisions:
  - e7b2202befea
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
  owner: iuc
  revisions:
  - 75c93c70d094
  tool_panel_section_label: Quality Control
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastp
  owner: iuc
  revisions:
  - 1d8fe9bc4cb0
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: flye
  owner: bgruening
  revisions:
  - 8d4f03b5fe9d
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasta_stats
  owner: iuc
  revisions:
  - 56022eb50bbd
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bandage
  owner: iuc
  revisions:
  - 94fe43e75ddc
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
  revisions:
  - ebb0dcdb621a
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
  owner: iuc
  revisions:
  - 09b53c1d4ab1
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: medaka_consensus_pipeline
  owner: iuc
  revisions:
  - 0e9e7fcdd543
  tool_panel_section_label: Nanopore
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: racon
  owner: bgruening
  revisions:
  - a199cd7ac344
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: busco
  owner: iuc
  revisions:
  - 0d243f458b53
  tool_panel_section_label: Annotation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
  owner: iuc
  revisions:
  - 09b53c1d4ab1
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasta_stats
  owner: iuc
  revisions:
  - 56022eb50bbd
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: medaka_consensus_pipeline
  owner: iuc
  revisions:
  - 0e9e7fcdd543
  tool_panel_section_label: Nanopore
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: racon
  owner: bgruening
  revisions:
  - a199cd7ac344
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
  owner: iuc
  revisions:
  - 09b53c1d4ab1
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: racon
  owner: bgruening
  revisions:
  - a199cd7ac344
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: meryl
  owner: iuc
  revisions:
  - eadfd71dde37
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: genomescope
  owner: iuc
  revisions:
  - 3169a38c2656
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
  owner: iuc
  revisions:
  - 09b53c1d4ab1
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: racon
  owner: bgruening
  revisions:
  - a199cd7ac344
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: nanoplot
  owner: iuc
  revisions:
  - edbb6c5028f5
  tool_panel_section_label: Nanopore
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastqc
  owner: devteam
  revisions:
  - e7b2202befea
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
  owner: iuc
  revisions:
  - 75c93c70d094
  tool_panel_section_label: Quality Control
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: flye
  owner: bgruening
  revisions:
  - 8d4f03b5fe9d
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasta_stats
  owner: iuc
  revisions:
  - 56022eb50bbd
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bandage
  owner: iuc
  revisions:
  - 94fe43e75ddc
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
  revisions:
  - ebb0dcdb621a
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: busco
  owner: iuc
  revisions:
  - 41030a6c03b7
  tool_panel_section_label: Annotation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
  revisions:
  - 675488238c96
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: chromeister
  owner: iuc
  revisions:
  - e483be1014b6
  tool_panel_section_label: Multiple Alignments
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: meryl
  owner: iuc
  revisions:
  - 29dabd8db6f2
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: merqury
  owner: iuc
  revisions:
  - 589078edd230
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: flye
  owner: bgruening
  revisions:
  - 3ee0ef312022
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: nanoplot
  owner: iuc
  revisions:
  - edbb6c5028f5
  tool_panel_section_label: Nanopore
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasta_stats
  owner: iuc
  revisions:
  - 0dbb995c7d35
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bandage
  owner: iuc
  revisions:
  - b2860df42e16
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: pilon
  owner: iuc
  revisions:
  - 11e5408fd238
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bwa
  owner: devteam
  revisions:
  - dfd8b7f78c37
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: prokka
  owner: crs4
  revisions:
  - bf68eb663bc3
  tool_panel_section_label: Annotation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: jbrowse
  owner: iuc
  revisions:
  - 17359b808b01
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: filtlong
  owner: iuc
  revisions:
  - 8880fb74ef56
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: nanoplot
  owner: iuc
  revisions:
  - edbb6c5028f5
  tool_panel_section_label: Nanopore
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: flye
  owner: bgruening
  revisions:
  - 3ee0ef312022
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bandage
  owner: iuc
  revisions:
  - b2860df42e16
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
  revisions:
  - ebb0dcdb621a
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: staramr
  owner: nml
  revisions:
  - 2fd4d4c9c5c2
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: prokka
  owner: crs4
  revisions:
  - 111884f0d912
  tool_panel_section_label: Annotation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: tbl2gff3
  owner: iuc
  revisions:
  - 965674d88d34
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: jbrowse
  owner: iuc
  revisions:
  - 17359b808b01
  tool_panel_section_label: Graph/Display Data
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: staramr
  owner: nml
  revisions:
  - 2fd4d4c9c5c2
  tool_panel_section_label: Assembly
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bowtie2
  owner: devteam
  revisions:
  - 749c918495f7
  tool_panel_section_label: Mapping
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: quast
  owner: iuc
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- name: bwa
  owner: devteam
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  tool_panel_section_label: Mapping
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  owner: devteam
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  owner: devteam
  revisions:
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  tool_panel_section_label: Mapping
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  owner: devteam
  revisions:
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  tool_panel_section_label: Variant Calling
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  owner: devteam
  revisions:
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  tool_panel_section_label: SAM Tools
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  owner: iuc
  revisions:
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  tool_panel_section_label: Variant Calling
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  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
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  revisions:
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  tool_panel_section_label: FASTQ Quality Control
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  tool_panel_section_label: Mapping
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  revisions:
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  tool_panel_section_label: Quality Control
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  owner: devteam
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  owner: devteam
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  tool_panel_section_label: Mapping
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  tool_panel_section_label: SAM Tools
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  tool_panel_section_label: Variant Calling
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  tool_panel_section_label: SAM Tools
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  revisions:
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  tool_panel_section_label: SAM Tools
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  owner: iuc
  revisions:
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  tool_panel_section_label: Variant Calling
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- name: snpeff
  owner: iuc
  revisions:
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  tool_panel_section_label: Variant Calling
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
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  owner: iuc
  revisions:
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  tool_panel_section_label: Gemini Tools
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  owner: iuc
  revisions:
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  tool_panel_section_label: Gemini Tools
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  revisions:
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  tool_panel_section_label: Gemini Tools
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- name: gemini_query
  owner: iuc
  revisions:
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  tool_panel_section_label: Gemini Tools
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  revisions:
  - 0a8c6b61f0f4
  tool_panel_section_label: Text Manipulation
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  revisions:
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  tool_panel_section_label: Filter and Sort
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  owner: iuc
  revisions:
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  tool_panel_section_label: Variant Calling
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: text_processing
  owner: bgruening
  revisions:
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  tool_panel_section_label: Text Manipulation
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  owner: wolma
  revisions:
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  tool_panel_section_label: Variant Calling
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: snippy
  owner: iuc
  revisions:
  - c9a8ef2aa380
  tool_panel_section_label: Variant Calling
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: jbrowse
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
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  owner: iuc
  revisions:
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  tool_panel_section_label: SAM/BAM
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  owner: devteam
  revisions:
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  tool_panel_section_label: SAM Tools
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- name: freebayes
  owner: devteam
  revisions:
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  tool_panel_section_label: Variant Calling
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- name: bcftools_norm
  owner: iuc
  revisions:
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  tool_panel_section_label: Variant Calling
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: snpeff
  owner: iuc
  revisions:
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  tool_panel_section_label: Variant Calling
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  owner: iuc
  revisions:
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  tool_panel_section_label: Gemini Tools
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  owner: iuc
  revisions:
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  tool_panel_section_label: Gemini Tools
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bwa
  owner: devteam
  revisions:
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  tool_panel_section_label: Mapping
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- name: fastqc
  owner: devteam
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  owner: iuc
  revisions:
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  owner: iuc
  revisions:
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  tool_panel_section_label: Quality Control
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  owner: devteam
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  tool_panel_section_label: SAM Tools
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  tool_panel_section_label: Variant Calling
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  revisions:
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  tool_panel_section_label: Variant Calling
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  tool_panel_section_label: Variant Calling
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  owner: iuc
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  tool_panel_section_label: Gemini Tools
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- name: fasta_compute_length
  owner: devteam
  revisions:
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  tool_panel_section_label: FASTA/FASTQ manipulation
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  owner: iuc
  revisions:
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  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
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  owner: iuc
  revisions:
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  tool_panel_section_label: Expression Tools
  tool_shed_url: https://toolshed.g2.bx.psu.edu/
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  owner: devteam
  revisions:
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  tool_panel_section_label: EMBOSS Tools
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  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
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  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
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- name: circos
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
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- name: circos
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  tool_panel_section_label: Graph/Display Data
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- name: circos
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
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