A straightforward script to randomly sample items (usually cells) from a loom file.
A Conda environment file can be found here: src/env.yml
The script can be launched using Slurm:
sbatch launcher.shA minimum number of items can be passed to the script with the -m, --minimum option. Default value is 10.
For a given combination, if a number of items lower than this minimum value were to be sampled, use the minimum value instead, or as many items as possible if there are less items available.