General Interest.bib

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@article{Ricotta2003,
author = {Ricotta, Carlo},
doi = {10.1016/S0022-5193(03)00026-2},
file = {:Users/Ty/Documents/Mendeley Desktop/Ricotta{\_}2003{\_}On parametric evenness measures.pdf:pdf},
issn = {00225193},
journal = {Journal of Theoretical Biology},
keywords = {concentration measures,information theory,lorenz order,species independence,stepwise data transformation},
month = {may},
number = {2},
pages = {189--197},
title = {{On parametric evenness measures}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0022519303000262},
volume = {222},
year = {2003}
}
@article{Holyoak2008,
abstract = {Movement is important to all organisms, and accordingly it is addressed in a huge number of papers in the literature. Of nearly 26,000 papers referring to movement, an estimated 34{\%} focused on movement by measuring it or testing hypotheses about it. This enormous amount of information is difficult to review and highlights the need to assess the collective completeness of movement studies and identify gaps. We surveyed 1,000 randomly selected papers from 496 journals and compared the facets of movement studied with a suggested framework for movement ecology, consisting of internal state (motivation, physiology), motion and navigation capacities, and external factors (both the physical environment and living organisms), and links among these components. Most studies simply measured and described the movement of organisms without reference to ecological or internal factors, and the most frequently studied part of the framework was the link between external factors and motion capacity. Few studies looked at the effects on movement of navigation capacity, or internal state, and those were mainly from vertebrates. For invertebrates and plants most studies were at the population level, whereas more vertebrate studies were conducted at the individual level. Consideration of only population-level averages promulgates neglect of between-individual variation in movement, potentially hindering the study of factors controlling movement. Terminology was found to be inconsistent among taxa and subdisciplines. The gaps identified in coverage of movement studies highlight research areas that should be addressed to fully understand the ecology of movement.},
author = {Holyoak, M. and Casagrandi, R.},
doi = {10.1073/pnas.0800483105},
file = {:Users/Ty/Documents/Mendeley Desktop/Holyoak, Casagrandi{\_}2008{\_}Trends and missing parts in the study of movement ecology.pdf:pdf},
issn = {1091-6490},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
keywords = {Animal Migration,Animals,Ecology,Ecology: trends,Movement},
month = {dec},
number = {49},
pages = {19060--19065},
pmid = {19060194},
title = {{Trends and missing parts in the study of movement ecology}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2614715{\&}tool=pmcentrez{\&}rendertype=abstract http://www.pnas.org/content/105/49/19060.short},
volume = {105},
year = {2008}
}
@article{Marck2011,
author = {Marck, G. and Harion, J.-L. and Nemer, M. and Russeil, S. and Bougeard, D.},
doi = {10.1016/j.enconman.2010.08.032},
file = {:Users/Ty/Documents/Mendeley Desktop/Marck et al.{\_}2011{\_}A new perspective of constructal networks cooling a finite-size volume generating heat.pdf:pdf},
issn = {01968904},
journal = {Energy Conversion and Management},
month = {feb},
number = {2},
pages = {1033--1046},
title = {{A new perspective of constructal networks cooling a finite-size volume generating heat}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0196890410003985},
volume = {52},
year = {2011}
}
@article{RevolutionAnalytics2012,
author = {{Revolution Analytics}},
file = {:Users/Ty/Documents/Mendeley Desktop/Revolution Analytics{\_}2012{\_}Package ‘ foreach '.pdf:pdf},
journal = {CRAN package},
pages = {1--10},
title = {{Package ‘ foreach '}},
year = {2012}
}
@article{Queiros-Conde2007,
author = {Queiros-Conde, Diogo and Bonjour, Jocelyn and Wechsatol, Wishsanuruk and Bejan, Adrian},
doi = {10.1016/j.physa.2007.05.037},
file = {:Users/Ty/Documents/Mendeley Desktop/Queiros-Conde et al.{\_}2007{\_}Parabolic scaling of tree-shaped constructal network.pdf:pdf},
issn = {03784371},
journal = {Physica A: Statistical Mechanics and its Applications},
keywords = {constructal theory,entropic skins geometry,networks,scale-dependent fractals},
month = {oct},
number = {2},
pages = {719--724},
title = {{Parabolic scaling of tree-shaped constructal network}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S037843710700550X},
volume = {384},
year = {2007}
}
@article{Dierssen2006,
author = {Dierssen, Heidi M and Kudela, Raphael M and Ryan, John P and Zimmerman, Richard C},
file = {:Users/Ty/Documents/Mendeley Desktop/Dierssen et al.{\_}2006{\_}Red and black tides Quantitative analysis of water-leaving radiance and perceived color for phytoplankton , colore.pdf:pdf},
journal = {Water},
number = {6},
pages = {2646--2659},
title = {{Red and black tides : Quantitative analysis of water-leaving radiance and perceived color for phytoplankton , colored dissolved organic matter , and suspended sediments}},
volume = {51},
year = {2006}
}
@article{McRae2008a,
author = {McRae, BH and Dickson, BG and Keitt, TH and Shah, VB},
file = {:Users/Ty/Documents/Mendeley Desktop/McRae et al.{\_}2008{\_}Using circuit theory to model connectivity in ecology, evolution, and conservation.pdf:pdf},
journal = {Ecology},
keywords = {circuit theory,dispersal,effective distance,gene flow,graph theory,habitat fragmentation,isolation,landscape connectivity,metapopulation theory,reserve design},
number = {10},
pages = {2712--2724},
title = {{Using circuit theory to model connectivity in ecology, evolution, and conservation}},
url = {http://www.esajournals.org/doi/full/10.1890/07-1861.1},
volume = {89},
year = {2008}
}
@article{Sommer1999,
author = {Sommer, Ulrich},
file = {:Users/Ty/Documents/Mendeley Desktop/Sommer{\_}1999{\_}Competition and coexistence.pdf:pdf},
journal = {Nature},
title = {{Competition and coexistence}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=6xdFQEFv1WkC{\&}oi=fnd{\&}pg=PA1{\&}dq=Competition+and+coexistence{\&}ots=NXy-rN1WzJ{\&}sig=t{\_}UZOriI3tSR4VZ7fmiug6Q-kww http://books.google.com/books?hl=en{\&}lr={\&}id=6xdFQEFv1WkC{\&}oi=fnd{\&}pg=PA1{\&}dq=Competition+and+coexistence{\&}ots=NX},
volume = {402},
year = {1999}
}
@article{Queiros-Conde2008a,
author = {Queiros-Conde, D. and Foucher, F. and Mouna{\"{i}}m-Rousselle, C. and Kassem, H. and Feidt, M.},
doi = {10.1016/j.physa.2008.09.018},
file = {:Users/Ty/Documents/Mendeley Desktop/Queiros-Conde et al.{\_}2008{\_}A scale-entropy diffusion equation to describe the multi-scale features of turbulent flames near a wall.pdf:pdf},
issn = {03784371},
journal = {Physica A: Statistical Mechanics and its Applications},
keywords = {flame-wall interaction,scale-dependent fractal,turbulent combustion},
month = {dec},
number = {27},
pages = {6712--6724},
title = {{A scale-entropy diffusion equation to describe the multi-scale features of turbulent flames near a wall}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0378437108007899},
volume = {387},
year = {2008}
}
@article{Knaus2012,
author = {Knaus, Jochen},
file = {:Users/Ty/Documents/Mendeley Desktop/Knaus{\_}2012{\_}Package ‘ snowfall '.pdf:pdf},
journal = {CRAN package},
title = {{Package ‘ snowfall '}},
year = {2012}
}
@article{Lindenmayer2000,
author = {Lindenmayer, D.B. and Lacy, R.C. and Pope, M.L.},
file = {:Users/Ty/Documents/Mendeley Desktop/Lindenmayer, Lacy, Pope{\_}2000{\_}Testing a simulation model for population viability analysis.pdf:pdf},
journal = {Ecological Applications},
number = {2},
pages = {580--597},
publisher = {Eco Soc America},
title = {{Testing a simulation model for population viability analysis}},
url = {http://www.esajournals.org/doi/abs/10.1890/1051-0761(2000)010{\%}255B0580:TASMFP{\%}255D2.0.CO{\%}253B2},
volume = {10},
year = {2000}
}
@article{Beauchamp1979,
annote = {Practice- doctors and therapists
Reseach - test hypotheses},
author = {Beauchamp, TL},
file = {:Users/Ty/Documents/Mendeley Desktop/Beauchamp{\_}1979{\_}The Belmont Report.pdf:pdf},
journal = {The Oxford textbook of clinical},
pages = {1--10},
title = {{The Belmont Report}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/cbdv.200490137/abstract http://scholar.google.com/scholar?hl=en{\&}btnG=Search{\&}q=intitle:The+Belmont+Report{\#}0},
year = {1979}
}
@article{Lieberman2010,
author = {Lieberman, Daniel E and Venkadesan, Madhusudhan and Werbel, William A and Daoud, Adam I and Andrea, Susan D and Davis, Irene S and Ojiambo, Robert and Eni, Mang and Pitsiladis, Yannis},
doi = {10.1038/nature08723},
file = {:Users/Ty/Desktop/nature08723.pdf:pdf},
journal = {Nature},
number = {January},
pages = {531--536},
title = {{Foot strike patterns and collision forces in habitually barefoot versus shod runners}},
volume = {463},
year = {2010}
}
@article{Bejan2011,
author = {Bejan, A and Lorente, S},
doi = {10.1063/1.3606555},
file = {:Users/Ty/Documents/Mendeley Desktop/Bejan, Lorente{\_}2011{\_}The constructal law origin of the logistics S curve.pdf:pdf},
journal = {Journal of Applied Physics},
pages = {2--5},
title = {{The constructal law origin of the logistics S curve}},
url = {http://scholar.google.com/scholar?hl=en{\&}btnG=Search{\&}q=intitle:The+constructal+law+origin+of+the+logistics+S+curve{\#}0 http://scitation.aip.org/content/aip/journal/jap/110/2/10.1063/1.3606555},
volume = {110},
year = {2011}
}
@article{Nadell2011,
abstract = {Bacteria commonly grow in densely populated surface-bound communities, termed biofilms, where they gain benefits including superior access to nutrients and resistance to environmental insults. The secretion of extracellular polymeric substances (EPS), which bind bacterial collectives together, is ubiquitously associated with biofilm formation. It is generally assumed that EPS secretion is a cooperative phenotype that benefits all neighboring cells, but in fact little is known about the competitive and evolutionary dynamics of EPS production. By studying Vibrio cholerae biofilms in microfluidic devices, we show that EPS-producing cells selectively benefit their clonemates and gain a dramatic advantage in competition against an isogenic EPS-deficient strain. However, this advantage carries an ecological cost beyond the energetic requirement for EPS production: EPS-producing cells are impaired for dispersal to new locations. Our study establishes that a fundamental tradeoff between local competition and dispersal exists among bacteria. Furthermore, this tradeoff can be governed by a single phenotype.},
author = {Nadell, Carey D and Bassler, Bonnie L},
doi = {10.1073/pnas.1111147108},
file = {:Users/Ty/Documents/Mendeley Desktop/Nadell, Bassler{\_}2011{\_}A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms.pdf:pdf},
isbn = {1111147108},
issn = {1091-6490},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
month = {aug},
number = {34},
pages = {14181--14185},
pmid = {21825170},
title = {{A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/21825170},
volume = {108},
year = {2011}
}
@article{Ewers2012,
author = {Ewers, Robert},
file = {:Users/Ty/Documents/Mendeley Desktop/Ewers{\_}2012{\_}A large-scale forest fragmentation experiment the Stability of Altered Forest Ecosystems Project.pdf:pdf},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
title = {{A large-scale forest fragmentation experiment: the Stability of Altered Forest Ecosystems Project}},
year = {2012}
}
@article{Enquist1998,
author = {Enquist, B.J. and Brown, J.H. and West, G.B.},
file = {:Users/Ty/Documents/Mendeley Desktop//Enquist, Brown, West{\_}1998{\_}Allometric scaling of plant energetics and population density.pdf:pdf},
issn = {0028-0836},
journal = {Nature},
number = {6698},
pages = {163--165},
publisher = {London)},
title = {{Allometric scaling of plant energetics and population density}},
url = {http://hermes.ffn.ub.es/oscar/Biologia/Escala/Nature{\_}395{\_}163{\_}1998.pdf},
volume = {395},
year = {1998}
}
@article{Manel2003,
author = {Manel, St{\'{e}}phanie and Schwartz, Michael K. and Luikart, Gordon and Taberlet, Pierre},
doi = {10.1016/S0169-5347(03)00008-9},
file = {:Users/Ty/Documents/Mendeley Desktop/Manel et al.{\_}2003{\_}Landscape genetics combining landscape ecology and population genetics.pdf:pdf},
issn = {01695347},
journal = {Trends in Ecology {\&} Evolution},
month = {apr},
number = {4},
pages = {189--197},
title = {{Landscape genetics: combining landscape ecology and population genetics}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0169534703000089},
volume = {18},
year = {2003}
}
@article{Patterson2009,
author = {Patterson, D.J.},
file = {:Users/Ty/Documents/Mendeley Desktop/Patterson{\_}2009{\_}Seeing the big picture on microbe distribution.pdf:pdf},
journal = {Science},
number = {5947},
pages = {1506},
publisher = {American Association for the Advancement of Science},
title = {{Seeing the big picture on microbe distribution}},
url = {http://www.sciencemag.org/content/325/5947/1506.short},
volume = {325},
year = {2009}
}
@article{Lettieri2011,
abstract = {To compare the efficacy of adjustable and fixed oral appliances for the treatment of OSA.},
author = {Lettieri, Christopher J and Paolino, Nathalie and Eliasson, Arn H and Shah, Anita a and Holley, Aaron B},
doi = {10.5664/JCSM.1300},
file = {:Users/Ty/Documents/Mendeley Desktop/Lettieri et al.{\_}2011{\_}Comparison of adjustable and fixed oral appliances for the treatment of obstructive sleep apnea.pdf:pdf},
issn = {1550-9397},
journal = {Journal of clinical sleep medicine : JCSM : official publication of the American Academy of Sleep Medicine},
keywords = {al nido y cambio,en peso de aves,para monitorear la atenci6n,pero pocos,que incuban},
month = {oct},
number = {5},
pages = {439--45},
pmid = {22003337},
title = {{Comparison of adjustable and fixed oral appliances for the treatment of obstructive sleep apnea.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/22003337},
volume = {7},
year = {2011}
}
@article{Ferry2012,
author = {Ferry, David K},
doi = {10.1126/science.1215900},
file = {:Users/Ty/Documents/Mendeley Desktop/Ferry{\_}2012{\_}Ohm ' s Law in a Quantum World.pdf:pdf},
journal = {Science},
title = {{Ohm ' s Law in a Quantum World}},
volume = {45},
year = {2012}
}
@article{Akcakaya1997,
author = {Akcakaya, H. Resit and Atwood, Jonathan L.},
doi = {10.1046/j.1523-1739.1997.96164.x},
file = {:Users/Ty/Documents/Mendeley Desktop/Akcakaya, Atwood{\_}1997{\_}A Habitat-Based Metapopulation Model of the California Gnatcatcher. Modelo de Metapoblacion Basado en el Habitat d.pdf:pdf},
issn = {0888-8892},
journal = {Conservation Biology},
month = {apr},
number = {2},
pages = {422--434},
title = {{A Habitat-Based Metapopulation Model of the California Gnatcatcher. Modelo de Metapoblacion Basado en el Habitat de Polioptila c. Californica}},
url = {http://doi.wiley.com/10.1046/j.1523-1739.1997.96164.x},
volume = {11},
year = {1997}
}
@article{Kendall1789,
author = {Kendall, BE and Briggs, CJ and Murdoch, WW and Turchin, P and SP},
file = {:Users/Ty/Documents/Mendeley Desktop//Kendall et al.{\_}1789{\_}Why do populations cycle.pdf:pdf},
journal = {A synthesis of statistical},
title = {{Why do populations cycle}},
url = {http://scholar.google.com/scholar?hl=en{\&}btnG=Search{\&}q=intitle:Why+do+populations+cycle?.pdf{\#}4},
year = {1789}
}
@article{Award2009,
author = {Award, Murray F Buell and Award, E Lucy Braun},
file = {:Users/Ty/Desktop/Mendeley Papers/Buell award application/Tuff{\_}Ty{\_}Buell{\_}Award{\_}Application.pdf:pdf},
journal = {Excellence In Ecology},
title = {{Application Form for Buell or Braun Award TY TUFF , Nest Failure Paradoxically Leads to Higher Fledgling Success . Department of Ecology and Evolutionary Biology , University of Colorado at Boulder , Abstract The Brown ‐ headed Cowbird ( Molothrus ater ) }},
year = {2009}
}
@article{Wainer1984,
author = {Wainer, H.},
file = {:Users/Ty/Documents/Mendeley Desktop/Wainer{\_}1984{\_}How to display data badly.pdf:pdf},
journal = {American Statistician},
publisher = {JSTOR},
title = {{How to display data badly}},
url = {http://www.jstor.org/stable/2683253},
year = {1984}
}
@incollection{Armstrong2009,
author = {Armstrong, DM},
booktitle = {Mammalian Species},
file = {:Users/Ty/Documents/Mendeley Desktop/Armstrong{\_}2009{\_}EBIO 3770—Animal Diversity Vertebrates Chapter 7—The Orders of Mammals.pdf:pdf},
title = {{EBIO 3770—Animal Diversity: Vertebrates Chapter 7—The Orders of Mammals}},
year = {2009}
}
@article{Halley2004,
author = {Halley, J. M. and Hartley, S. and Kallimanis, a. S. and Kunin, W. E. and Lennon, J. J. and Sgardelis, S. P.},
doi = {10.1111/j.1461-0248.2004.00568.x},
file = {:Users/Ty/Documents/Mendeley Desktop/Halley et al.{\_}2004{\_}Uses and abuses of fractal methodology in ecology.pdf:pdf},
issn = {1461023X},
journal = {Ecology Letters},
keywords = {a,e,halley 1,hartley 2,j,kallimanis 1,kunin 3,m,multifractals,s,scale,scaling,spatial pattern,species distribution,w},
month = {feb},
number = {3},
pages = {254--271},
title = {{Uses and abuses of fractal methodology in ecology}},
url = {http://doi.wiley.com/10.1111/j.1461-0248.2004.00568.x},
volume = {7},
year = {2004}
}
@article{Nur1999,
author = {Nur, N and Jones, SL},
file = {:Users/Ty/Documents/Mendeley Desktop/Nur, Jones{\_}1999{\_}Statistical guide to data analysis of avian monitoring programs.pdf:pdf},
journal = {Analysis},
title = {{Statistical guide to data analysis of avian monitoring programs}},
url = {http://scholar.google.com/scholar?hl=en{\&}btnG=Search{\&}q=intitle:Statistical+Guide+to+Data+Analysis+of+Avian+Monitoring+Programs{\#}0},
year = {1999}
}
@book{Smith2002,
author = {Smith, Lindsay I},
booktitle = {Statistics},
file = {:Users/Ty/Documents/Mendeley Desktop/Smith{\_}2002{\_}A tutorial on Principal Components Analysis Introduction.pdf:pdf},
isbn = {0471852236},
title = {{A tutorial on Principal Components Analysis Introduction}},
year = {2002}
}
@article{Grimm1999,
author = {Grimm, V},
doi = {10.1016/S0304-3800(98)00188-4},
file = {:Users/Ty/Documents/Mendeley Desktop/Grimm{\_}1999{\_}Ten years of individual-based modelling in ecology what have we learned and what could we learn in the future.pdf:pdf},
issn = {03043800},
journal = {Ecological Modelling},
keywords = {ecological modelling,individual-based modelling,review,stability properties,theoretical ecology},
month = {feb},
number = {2-3},
pages = {129--148},
title = {{Ten years of individual-based modelling in ecology: what have we learned and what could we learn in the future?}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0304380098001884},
volume = {115},
year = {1999}
}
@article{Clark2007,
author = {Clark, M.E. and Martin, T.E.},
doi = {10.1016/j.ecolmodel.2007.06.008},
file = {:Users/Ty/Documents/Mendeley Desktop/Clark, Martin{\_}2007{\_}Modeling tradeoffs in avian life history traits and consequences for population growth.pdf:pdf},
issn = {03043800},
journal = {Ecological Modelling},
month = {dec},
number = {2-4},
pages = {110--120},
title = {{Modeling tradeoffs in avian life history traits and consequences for population growth}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0304380007003195},
volume = {209},
year = {2007}
}
@article{Frazier2010,
author = {Frazier, Melanie R and Woods, H Arthur and Harrison, Jon F},
file = {:Users/Ty/Desktop/30162163.pdf:pdf},
journal = {Physiological and Biochemical Zoology},
number = {5},
pages = {641--650},
title = {{Interactive Effects of Rearing Temperature and Oxygen on the Development of Drosophila melanogaster}},
volume = {74},
year = {2010}
}
@article{Bustamante2006,
author = {Bustamante, R and Coloma, Luis A and Consuegra, Jamie A and Fogden, Michael P L and Pounds, J Alan and Puschendorf, Robert and Foster, Pru N and Marca, Enrique La and Masters, Karen L and Still, Christopher J and Young, Bruce E and Ron, Santiago R and Sa, G Arturo},
doi = {10.1038/nature04246},
file = {:Users/Ty/Documents/Mendeley Desktop/Bustamante et al.{\_}2006{\_}Widespread amphibian extinctions from epidemic disease driven by global warming.pdf:pdf},
journal = {Nature},
number = {7073},
pages = {161--167},
publisher = {Macmillan Magazines Ltd, Brunel Rd, Houndsmills, Basingstoke, Hants, RG 21 2 XS, UK},
title = {{Widespread amphibian extinctions from epidemic disease driven by global warming}},
url = {http://www.jcu.edu.au/school/phtm/PHTM/frogs/papers/pounds-2006-suppl.pdf},
volume = {439},
year = {2006}
}
@misc{Mendeley2009,
address = {London},
annote = {Double click on the entry on the left to view the PDF.},
author = {Mendeley},
booktitle = {Mendeley Desktop},
file = {:Users/Ty/Documents/Mendeley Desktop/Mendeley{\_}2009{\_}Getting Started with Mendeley(2).pdf:pdf;:Users/Ty/Documents/Mendeley Desktop/Mendeley{\_}2009{\_}Getting Started with Mendeley.pdf:pdf;:Users/Ty/Documents/Mendeley Desktop//Mendeley{\_}2009{\_}Getting Started with Mendeley.pdf:pdf},
keywords = {Mendeley},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2009}
}
@article{Sarkar2010,
author = {Sarkar, Deepayan},
file = {:Users/Ty/Documents/Mendeley Desktop/Sarkar{\_}2010{\_}Package ‘ lattice '.pdf:pdf},
journal = {Program R},
title = {{Package ‘ lattice '}},
year = {2010}
}