PDV: an integrative proteomics data viewer
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Updated
May 20, 2024 - Java
PDV: an integrative proteomics data viewer
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Library for mass spectrometry projects
NeoFlow: a proteogenomics pipeline for neoantigen discovery
Python tools for proteogenomics analysis toolkit
PepQuery: a targeted peptide search engine
PGA: a tool for ProteoGenomics Analysis
Customized protein database construction
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.
PGATK: ProteoGenomics Analysis ToolKit
Research into statistical distributions of genomes, proteomes and reactomes
Multi-Omics Peptide Generator
Proteogenomics database-generation tool for protein haplotypes and variants
A python library with scripts and helpers classes for quantms workflow
The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
6-frame proteogenomic peptide-spectrum match identification engine
Saccharomyces cerevisiae information, gene calling and ORF identification assistant
ProteomeGenomics Database Creation - Nextflow Pipeline
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