AMR annotation and feature generation
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Updated
Aug 29, 2024 - Python
AMR annotation and feature generation
The annotation tool for Uniform Meaning Representation and Abstract Meaning Representation, adopting similar interface and annotation command to ISI editor, support multiple languages such as Arabic, etc
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
Conditional Variational Auto-Encoder for generation of synthetic data for Antimicrobial Resistance.
Prototype patch graph implementation
RepGraph - a meaning representation graph visualiser and analysis tool.
This One Health AMR repository is a set of metadata packages, reporting scripts and documents that allow countries to create a starting national Antimicrobial Resistance surveillance system based on open-source components. This global public good is the result of a 3-year One Health AMR project Sponsored by FIND (the Foundation for Innovative Ne…
The fred2_description package in ROS 2 is dedicated to creating and launching the robot description for simulation and real-world applications. It utilizes URDF files, Xacro, and launch files to represent the robot's structure and visualize it in tools like RViz.
AMRFinderPlus-Matrix contains script for processing the output files of AMRFinderPlus and generating a binary matrix that shows the presence or absence of antibiotic resistance genes, stress response genes, and virulence genes in each sample.
Dependency graph stats and AMR paper
Bacterial swiss-army-knife pipeline for NGS data
AMR prediction from S. pneumoniae assemblies in the browser
Understanding the semantic shift in online communities using AMR embedding models.
Dashboard for ACORN AMR data
Autonomous, mobile robot, LIDAR SLAM localization
AMR extension for the spatial domain, with grounded frame of reference tracking
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