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fix dagitty

fix dagitty #111

Workflow file for this run

on:
push:
branches:
- master
pull_request:
branches:
- master
name: booklet
jobs:
bookdown:
name: build-bookdown
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Install system dependencies
if: runner.os == 'Linux'
run: |
sudo apt update
sudo apt install -y curl libcurl4-doc libcurl4-openssl-dev \
libharfbuzz-dev libfribidi-dev libmagick++-dev libpoppler-cpp-dev \
texlive-extra-utils ghostscript
- name: Install pandoc
uses: r-lib/actions/setup-pandoc@v2
- name: Install tinyTeX
uses: r-lib/actions/setup-tinytex@v2
- name: Install R
uses: r-lib/actions/setup-r@v2
with:
r-version: 'release'
- name: Install R dependencies via renv
uses: r-lib/actions/setup-renv@v2
- name: Cache bookdown results
uses: actions/cache@v4
with:
path: _bookdown_files
key: bookdown-2-${{ hashFiles('**/*Rmd') }}
restore-keys: bookdown-2-
- name: Render book HTML
run: |
Rscript -e 'bookdown::clean_book(TRUE)'
Rscript -e 'bookdown::render_book("index.Rmd", quiet = TRUE)'
- name: Render book PDF
run: |
Rscript -e 'bookdown::render_book("index.Rmd", "bookdown::pdf_book")'
- uses: actions/upload-artifact@v4
with:
name: _handbook
path: _handbook/
# Need to first create an empty gh-pages branch
# see https://pkgdown.r-lib.org/reference/deploy_site_github.html
# and also add secrets for a GH_PAT and EMAIL to the repository
# gh-action from https://github.com/Cecilapp/GitHub-Pages-deploy
checkout-and-deploy:
runs-on: ubuntu-latest
needs: bookdown
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Download Artifact
uses: actions/download-artifact@v4
with:
# Artifact name
name: _handbook # optional
# Destination path
path: _handbook # optional
- name: Abbreviate Git SHA
run: echo "GITHUB_SHA_SHORT=$(git rev-parse --short $GITHUB_SHA)" >> $GITHUB_ENV
- name: Deploy to GitHub Pages
uses: Cecilapp/GitHub-Pages-deploy@v3
if: github.event_name != 'pull_request'
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
email: ${{ secrets.EMAIL }} # must be a GitHub-verified email
build_dir: _handbook/ # "_site/" by default
commit_message: Update book via ${{ env.GITHUB_SHA_SHORT }}